RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 GOLGA6L7A0A1B0GV03 622 aa14.09□□□□□ -0.15
SS18-204ENST00000539244 TRABD2BA6NFA1 517 aa14.09□□□□□ -0.15
SS18-204ENST00000539244 KCNK3O14649 394 aa14.09□□□□□ -0.15
SS18-204ENST00000539244 LTFP02788 710 aa14.09□□□□□ -0.15
SS18-204ENST00000539244 TBX4P57082 545 aa14.09□□□□□ -0.15
SS18-204ENST00000539244 SFSWAPQ12872 951 aaKnown RBP14.09□□□□□ -0.15
SS18-204ENST00000539244 STILQ15468 1287 aa14.09□□□□□ -0.15
SS18-204ENST00000539244 CNGA2Q16280 664 aa14.09□□□□□ -0.15
SS18-204ENST00000539244 ZNF658Q5TYW1 1059 aaPredicted RBP14.09□□□□□ -0.15
SS18-204ENST00000539244 NADSYN1Q6IA69 706 aa14.09□□□□□ -0.15
SS18-204ENST00000539244 ADAT2Q7Z6V5 191 aaKnown RBP14.09□□□□□ -0.15
SS18-204ENST00000539244 SCUBE3Q8IX30 993 aa14.09□□□□□ -0.15
SS18-204ENST00000539244 MRGPRX3Q96LB0 322 aa14.09□□□□□ -0.15
SS18-204ENST00000539244 TSG101Q99816 390 aa14.09□□□□□ -0.15
SS18-204ENST00000539244 DDX50Q9BQ39 737 aaKnown RBP14.09□□□□□ -0.15
SS18-204ENST00000539244 ZSWIM1Q9BR11 485 aa14.09□□□□□ -0.15
SS18-204ENST00000539244 ACE2Q9BYF1 805 aaPredicted RBP14.09□□□□□ -0.15
SS18-204ENST00000539244 RMND1Q9NWS8 449 aa14.09□□□□□ -0.15
SS18-204ENST00000539244 ADAMTS1Q9UHI8 967 aa14.09□□□□□ -0.15
SS18-204ENST00000539244 PCDHGA1Q9Y5H4 931 aa14.09□□□□□ -0.15
SS18-204ENST00000539244 ITIH6Q6UXX5 1313 aa14.09□□□□□ -0.15
SS18-204ENST00000539244 IGSF10Q6WRI0 2623 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 A0A087WV48 116 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 TARSL2A2RTX5 802 aaKnown RBP14.08□□□□□ -0.16
SS18-204ENST00000539244 SIN3BO75182 1162 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 FBXO21O94952 628 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 CSKP41240 450 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 RGS7P49802 495 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 PMS1P54277 932 aaKnown RBP14.08□□□□□ -0.16
SS18-204ENST00000539244 GALCP54803 685 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 ST8SIA6P61647 398 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 LRRC63Q05C16 580 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 PNOCQ13519 176 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 CST6Q15828 149 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 C9orf64Q5T6V5 341 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 ANKRD40Q6AI12 368 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 TMEM270Q6UE05 265 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 TMPRSS12Q86WS5 348 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 PDCD7Q8N8D1 485 aaKnown RBP14.08□□□□□ -0.16
SS18-204ENST00000539244 SPATA20Q8TB22 786 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 HNRNPLLQ8WVV9 542 aaKnown RBP14.08□□□□□ -0.16
SS18-204ENST00000539244 SLC39A13Q96H72 371 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 FCRL2Q96LA5 508 aaPredicted RBP14.08□□□□□ -0.16
SS18-204ENST00000539244 GSDMAQ96QA5 445 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 MTG2Q9H4K7 406 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 EBF2Q9HAK2 575 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 FBXL12Q9NXK8 326 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 FTSJ1Q9UET6 329 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 SERGEFQ9UGK8 458 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 ARMCX3Q9UH62 379 aaPredicted RBP14.08□□□□□ -0.16
SS18-204ENST00000539244 FZD4Q9ULV1 537 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 TPX2Q9ULW0 747 aaKnown RBP14.08□□□□□ -0.16
SS18-204ENST00000539244 ATP6V1DQ9Y5K8 247 aa14.08□□□□□ -0.16
SS18-204ENST00000539244 NYNRINQ9P2P1 1898 aaKnown RBP14.08□□□□□ -0.16
SS18-204ENST00000539244 TYW5A2RUC4 315 aaKnown RBP14.07□□□□□ -0.16
SS18-204ENST00000539244 GOLGA8CPA6NN73 597 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 M0QYV0 167 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 RNF225M0QZC1 329 aaPredicted RBP14.07□□□□□ -0.16
SS18-204ENST00000539244 RNASEH1O60930 286 aaKnown RBP14.07□□□□□ -0.16
SS18-204ENST00000539244 FYNP06241 537 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 SRPRAP08240 638 aaKnown RBP14.07□□□□□ -0.16
SS18-204ENST00000539244 RPL34P49207 117 aaKnown RBP14.07□□□□□ -0.16
SS18-204ENST00000539244 FMO5P49326 533 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 CCR5P51681 352 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 C21orf59P57076 290 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 RPS24P62847 133 aaKnown RBP14.07□□□□□ -0.16
SS18-204ENST00000539244 CYP4F3Q08477 520 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 MS4A13Q5J8X5 152 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 NCEH1Q6PIU2 408 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 BEND5Q7L4P6 421 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 MARCH9Q86YJ5 346 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 DHX40Q8IX18 779 aaKnown RBP14.07□□□□□ -0.16
SS18-204ENST00000539244 OR2T34Q8NGX1 318 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 CLEC4CQ8WTT0 213 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 SKA1Q96BD8 255 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 MYEOVQ96EZ4 313 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 SLC6A18Q96N87 628 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 SERPINB11Q96P15 392 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 ELF4Q99607 663 aaPredicted RBP14.07□□□□□ -0.16
SS18-204ENST00000539244 NEUROG2Q9H2A3 272 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 METTL14Q9HCE5 456 aaKnown RBP14.07□□□□□ -0.16
SS18-204ENST00000539244 STIM2Q9P246 746 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 TLR6Q9Y2C9 796 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 ASXL3Q9C0F0 2248 aa14.07□□□□□ -0.16
SS18-204ENST00000539244 EDDM13A0A1B0GTR0 161 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 A0A1W2PP55 124 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 A0A1W2PR77 199 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 FAM149AA5PLN7 773 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 LRRC72A6NJI9 287 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 MID1O15344 667 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 YKT6O15498 198 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 LUC7L3O95232 432 aaKnown RBP14.06□□□□□ -0.16
SS18-204ENST00000539244 WNT1P04628 370 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 CDK4P11802 303 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 IL9RQ01113 521 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 LRMPQ12912 555 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 CDH18Q13634 790 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 KCNJ12Q14500 433 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 SHBQ15464 509 aa14.06□□□□□ -0.16
SS18-204ENST00000539244 FSCBQ5H9T9 825 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms