RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 ABL1P00519 1130 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 IGLV3-19P01714 112 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 CISD3P0C7P0 127 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 PNMA6AP0CW24 399 aaPredicted RBP13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 CD19P15391 556 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 GRK6P43250 576 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 TPMTP51580 245 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 NDST1P52848 882 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 CACNA2D1P54289 1103 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 CLDN6P56747 220 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 JAM2P57087 298 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 PSMC1P62191 440 aaKnown RBP13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 TLE3Q04726 772 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 KLHL30Q0D2K2 578 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 FUT11Q495W5 492 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 GRAMD4Q6IC98 578 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 DPY19L2P1Q6NXN4 242 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 KIAA1324Q6UXG2 1013 aaKnown RBP13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 VPS36Q86VN1 386 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 UNC93AQ86WB7 457 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 SHC3Q92529 594 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 WBP1Q96G27 269 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 PDLIM2Q96JY6 352 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 C8orf48Q96LL4 319 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 SYT15Q9BQS2 421 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 MRPL45Q9BRJ2 306 aaKnown RBP13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 NT5C1AQ9BXI3 368 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 SEMA4CQ9C0C4 833 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 SEPT11Q9NVA2 429 aaKnown RBP13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 EHD2Q9NZN4 543 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 SNX11Q9Y5W9 270 aa13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 ARID1BQ8NFD5 2236 aaPredicted RBP13.04□□□□□ -0.32
CLSTN3-208ENST00000538933 F8VP50 259 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 ERVH48-1M5A8F1 160 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 KCNK3O14649 394 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 RRP8O43159 456 aaKnown RBP13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 CYP26A1O43174 497 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 CACNG3O60359 315 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 PDGFRBP09619 1106 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 FAM163BP0C2L3 166 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 WARSP23381 471 aaKnown RBP13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 KCNC4Q03721 635 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 ENPP2Q13822 863 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 ANO4Q32M45 955 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 CCDC157Q569K6 752 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 KCNT1Q5JUK3 1230 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 TC2NQ8N9U0 490 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 SYN2Q92777 582 aaPredicted RBP13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 TRIM44Q96DX7 344 aaPredicted RBP13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 P2RY11Q96G91 374 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 PCED1BQ96HM7 432 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 TMEM176AQ96HP8 235 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 TNIP3Q96KP6 325 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 HEXIM2Q96MH2 286 aaKnown RBP13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 PANX2Q96RD6 677 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 PPP1R9BQ96SB3 815 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 HNRNPABQ99729 332 aaKnown RBP13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 NRSN2Q9GZP1 204 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 SDCBP2Q9H190 292 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 DNAJC17Q9NVM6 304 aaKnown RBP13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 CDH9Q9ULB4 789 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 NME7Q9Y5B8 376 aa13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 BZW2Q9Y6E2 419 aaKnown RBP13.03□□□□□ -0.32
CLSTN3-208ENST00000538933 RNF225M0QZC1 329 aaPredicted RBP13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 PAPSS1O43252 624 aaPredicted RBP13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 THAP12O43422 761 aa13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 SERPING1P05155 500 aa13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 JUPP14923 745 aa13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 GNA15P30679 374 aa13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 AFF3P51826 1226 aaKnown RBP13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 INCA1Q0VD86 236 aa13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 TARDBPQ13148 414 aaKnown RBP eCLIP13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 SNX30Q5VWJ9 437 aa13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 FAM71AQ8IYT1 594 aa13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 CCDC112Q8NEF3 446 aa13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 MYCBPAPQ8TBZ2 947 aa13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 DNAJC7Q99615 494 aa13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 AIPL1Q9NZN9 384 aa13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 ANKRD6Q9Y2G4 727 aa13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 PCDHGA1Q9Y5H4 931 aa13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 STON1Q9Y6Q2 735 aa13.02□□□□□ -0.33
CLSTN3-208ENST00000538933 B8ZZF3 427 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 H0Y8X5 98 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 MED7O43513 233 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 IPO7O95373 1038 aaKnown RBP13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 PAEPP09466 180 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 SKILP12757 684 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 TYRP14679 529 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 ACO1P21399 889 aaKnown RBP13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 TNFAIP3P21580 790 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 ANXA13P27216 316 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 OXTRP30559 389 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 CYP27A1Q02318 531 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 ORC1Q13415 861 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 MAPRE1Q15691 268 aaKnown RBP13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 SGO2Q562F6 1265 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 C6orf118Q5T5N4 469 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 TAF3Q5VWG9 929 aa13.01□□□□□ -0.33
CLSTN3-208ENST00000538933 SMYD5Q6GMV2 418 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms