RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 CFAP52Q8N1V2 620 aa8.77□□□□□ -1.01
USP28-203ENST00000537490 CARNMT1Q8N4J0 409 aa8.77□□□□□ -1.01
USP28-203ENST00000537490 HJURPQ8NCD3 748 aaPredicted RBP8.77□□□□□ -1.01
USP28-203ENST00000537490 RHBDD1Q8TEB9 315 aa8.77□□□□□ -1.01
USP28-203ENST00000537490 SETD7Q8WTS6 366 aaKnown RBP8.77□□□□□ -1.01
USP28-203ENST00000537490 FAM149B1Q96BN6 582 aa8.77□□□□□ -1.01
USP28-203ENST00000537490 SERPINB11Q96P15 392 aa8.77□□□□□ -1.01
USP28-203ENST00000537490 DDX50Q9BQ39 737 aaKnown RBP8.77□□□□□ -1.01
USP28-203ENST00000537490 SLC4A5Q9BY07 1137 aa8.77□□□□□ -1.01
USP28-203ENST00000537490 INTS2Q9H0H0 1204 aaKnown RBP8.77□□□□□ -1.01
USP28-203ENST00000537490 RSPH9Q9H1X1 276 aaPredicted RBP8.77□□□□□ -1.01
USP28-203ENST00000537490 FBRSQ9HAH7 460 aa8.77□□□□□ -1.01
USP28-203ENST00000537490 TM9SF3Q9HD45 589 aa8.77□□□□□ -1.01
USP28-203ENST00000537490 UBE2TQ9NPD8 197 aaPredicted RBP8.77□□□□□ -1.01
USP28-203ENST00000537490 ACP6Q9NPH0 428 aa8.77□□□□□ -1.01
USP28-203ENST00000537490 SERGEFQ9UGK8 458 aa8.77□□□□□ -1.01
USP28-203ENST00000537490 TLR6Q9Y2C9 796 aa8.77□□□□□ -1.01
USP28-203ENST00000537490 SNX11Q9Y5W9 270 aa8.77□□□□□ -1.01
USP28-203ENST00000537490 CKAP5Q14008 2032 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 KNL1Q8NG31 2342 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 BICDL2A1A5D9 508 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 TTC34A8MYJ7 566 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 LETM1O95202 739 aaPredicted RBP8.76□□□□□ -1.01
USP28-203ENST00000537490 GNA14O95837 355 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 AFPP02771 609 aaKnown RBP8.76□□□□□ -1.01
USP28-203ENST00000537490 ASLP04424 464 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 IGHV4-34P06331 123 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 KRT5P13647 590 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 CD27P26842 260 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 CTSOP43234 321 aaPredicted RBP8.76□□□□□ -1.01
USP28-203ENST00000537490 ACADSBP45954 432 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 AFF3P51826 1226 aaKnown RBP8.76□□□□□ -1.01
USP28-203ENST00000537490 MARSP56192 900 aaKnown RBP8.76□□□□□ -1.01
USP28-203ENST00000537490 ST8SIA6P61647 398 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 PITX1P78337 314 aaPredicted RBP8.76□□□□□ -1.01
USP28-203ENST00000537490 SCAPQ12770 1279 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 PAK1Q13153 545 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 NNTQ13423 1086 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 BECN1Q14457 450 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 HNRNPA1L2Q32P51 320 aaKnown RBP8.76□□□□□ -1.01
USP28-203ENST00000537490 ZC3H12AQ5D1E8 599 aaKnown RBP8.76□□□□□ -1.01
USP28-203ENST00000537490 PITRM1Q5JRX3 1037 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 C9orf64Q5T6V5 341 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 RAP1GAP2Q684P5 730 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 GJB7Q6PEY0 223 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 CCNI2Q6ZMN8 369 aaPredicted RBP8.76□□□□□ -1.01
USP28-203ENST00000537490 BEND5Q7L4P6 421 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 TMEM110Q86TL2 294 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 APCDD1Q8J025 514 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 LGI2Q8N0V4 545 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 ZNF557Q8N988 423 aaPredicted RBP8.76□□□□□ -1.01
USP28-203ENST00000537490 BAHD1Q8TBE0 780 aaPredicted RBP8.76□□□□□ -1.01
USP28-203ENST00000537490 GANCQ8TET4 914 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 STK32AQ8WU08 396 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 ZNF606Q8WXB4 792 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 FAM129BQ96TA1 746 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 NEUROG2Q9H2A3 272 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 PABPC3Q9H361 631 aaKnown RBP8.76□□□□□ -1.01
USP28-203ENST00000537490 EBF2Q9HAK2 575 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 SGK2Q9HBY8 427 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 OSGEPQ9NPF4 335 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 TOR4AQ9NXH8 423 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 FBXL12Q9NXK8 326 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 TJP2Q9UDY2 1190 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 SLCO3A1Q9UIG8 710 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 ERVW-1Q9UQF0 538 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 APOBEC2Q9Y235 224 aaKnown RBP8.76□□□□□ -1.01
USP28-203ENST00000537490 BTBD3Q9Y2F9 522 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 ANKRD6Q9Y2G4 727 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 PCDHGB2Q9Y5G2 931 aa8.76□□□□□ -1.01
USP28-203ENST00000537490 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.76□□□□□ -1.01
USP28-203ENST00000537490 A0A1W2PP55 124 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 TYW5A2RUC4 315 aaKnown RBP8.75□□□□□ -1.01
USP28-203ENST00000537490 FAM47DPA6NHR8 397 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 BECN2A8MW95 431 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 E5RJQ4 531 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 H0Y8X5 98 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 CAPN9O14815 690 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 MID1O15344 667 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 FLRT2O43155 660 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 SART1O43290 800 aaKnown RBP8.75□□□□□ -1.01
USP28-203ENST00000537490 THAP12O43422 761 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 LUC7L3O95232 432 aaKnown RBP8.75□□□□□ -1.01
USP28-203ENST00000537490 TRUB2O95900 331 aaKnown RBP8.75□□□□□ -1.01
USP28-203ENST00000537490 IGLV3-25P01717 112 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 ATXN1LP0C7T5 689 aaKnown RBP8.75□□□□□ -1.01
USP28-203ENST00000537490 TACR2P21452 398 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 GRIA4P48058 902 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 NUMBP49757 651 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 GALCP54803 685 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 APBA1Q02410 837 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 EIF4EBP2Q13542 120 aaPredicted RBP8.75□□□□□ -1.01
USP28-203ENST00000537490 CDH18Q13634 790 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 TAF5Q15542 800 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 TEAD4Q15561 434 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 TTC31Q49AM3 519 aaPredicted RBP8.75□□□□□ -1.01
USP28-203ENST00000537490 PRAMEF14Q5SWL7 426 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 KIAA0895LQ68EN5 471 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 USP30Q70CQ3 517 aa8.75□□□□□ -1.01
USP28-203ENST00000537490 CHSY1Q86X52 802 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms