RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 CEP83Q9Y592 693 aa13.6□□□□□ -0.23
RTN3-207ENST00000536011 ZFHX4Q86UP3 3567 aa13.6□□□□□ -0.23
RTN3-207ENST00000536011 ADAMTS9Q9P2N4 1935 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 GOLGA6L7A0A1B0GV03 622 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 SPAARA0A1B0GVQ0 90 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 E5RJQ4 531 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 SEMA4FO95754 770 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 FYNP06241 537 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 GLI1P08151 1106 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 ZNF883P0CG24 379 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 CD59P13987 128 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 CSKP41240 450 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 MATKP42679 507 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 MTIF2P46199 727 aaKnown RBP13.59□□□□□ -0.23
RTN3-207ENST00000536011 RPS14P62263 151 aaKnown RBP13.59□□□□□ -0.23
RTN3-207ENST00000536011 RPS24P62847 133 aaKnown RBP13.59□□□□□ -0.23
RTN3-207ENST00000536011 CDK17Q00537 523 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 SLC12A1Q13621 1099 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 ARID5BQ14865 1188 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 NADSYN1Q6IA69 706 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 LRSAM1Q6UWE0 723 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 USP30Q70CQ3 517 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 CHSY1Q86X52 802 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 NAXDQ8IW45 347 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 ZNF366Q8N895 744 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 ATP6V0D2Q8N8Y2 350 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 ADAM32Q8TC27 787 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 WFDC5Q8TCV5 224 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 CRACR2AQ9BSW2 395 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 SCNM1Q9BWG6 230 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 NUCKS1Q9H1E3 243 aaKnown RBP13.59□□□□□ -0.23
RTN3-207ENST00000536011 FAM204AQ9H8W3 233 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 PRSS16Q9NQE7 514 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.59□□□□□ -0.23
RTN3-207ENST00000536011 KIAA1522Q9P206 1035 aaPredicted RBP13.59□□□□□ -0.23
RTN3-207ENST00000536011 EIF2B4Q9UI10 523 aaKnown RBP13.59□□□□□ -0.23
RTN3-207ENST00000536011 WASF3Q9UPY6 502 aa13.59□□□□□ -0.23
RTN3-207ENST00000536011 CFAP47Q6ZTR5 3102 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 WDFY3Q8IZQ1 3526 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 F5H5T6 163 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 PAPSS1O43252 624 aaPredicted RBP13.58□□□□□ -0.24
RTN3-207ENST00000536011 HSF2BPO75031 334 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 GJB3O75712 270 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 KRT37O76014 449 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 LUC7L3O95232 432 aaKnown RBP13.58□□□□□ -0.24
RTN3-207ENST00000536011 TRUB2O95900 331 aaKnown RBP13.58□□□□□ -0.24
RTN3-207ENST00000536011 SRPRAP08240 638 aaKnown RBP13.58□□□□□ -0.24
RTN3-207ENST00000536011 ABCB4P21439 1286 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 NNMTP40261 264 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 OXCT1P55809 520 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 PTK2Q05397 1052 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 CAMK4Q16566 473 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 ARHGAP44Q17R89 818 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 HNRNPA1L2Q32P51 320 aaKnown RBP13.58□□□□□ -0.24
RTN3-207ENST00000536011 DCAF6Q58WW2 860 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 EFHC1Q5JVL4 640 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 RABGAP1LQ5R372 815 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 LGI2Q8N0V4 545 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 OR2I1PQ8NGU4 316 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 GANCQ8TET4 914 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 SHC3Q92529 594 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 PPP1R9BQ96SB3 815 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 RSPH9Q9H1X1 276 aaPredicted RBP13.58□□□□□ -0.24
RTN3-207ENST00000536011 OSGEPQ9NPF4 335 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 ASNSD1Q9NWL6 643 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 DACH1Q9UI36 760 aa13.58□□□□□ -0.24
RTN3-207ENST00000536011 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.58□□□□□ -0.24
RTN3-207ENST00000536011 PCNX2A6NKB5 2137 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 EDDM13A0A1B0GTR0 161 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 TARSL2A2RTX5 802 aaKnown RBP13.57□□□□□ -0.24
RTN3-207ENST00000536011 KCNU1A8MYU2 1149 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 SH3BP5O60239 455 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 IGLV3-25P01717 112 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 TACR2P21452 398 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 CCR1P32246 355 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 ACSL1P33121 698 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 ECT2LQ008S8 904 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 SULT2A1Q06520 285 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 TRIP6Q15654 476 aaKnown RBP13.57□□□□□ -0.24
RTN3-207ENST00000536011 ZC3H12AQ5D1E8 599 aaKnown RBP13.57□□□□□ -0.24
RTN3-207ENST00000536011 PITRM1Q5JRX3 1037 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 SYPL2Q5VXT5 272 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 CFAP52Q8N1V2 620 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 RNF34Q969K3 372 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 PPP1R13BQ96KQ4 1090 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 LMLNQ96KR4 655 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 PABPC3Q9H361 631 aaKnown RBP13.57□□□□□ -0.24
RTN3-207ENST00000536011 C6orf106Q9H6K1 298 aaPredicted RBP13.57□□□□□ -0.24
RTN3-207ENST00000536011 GAREM1Q9H706 876 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 SYNCQ9H7C4 482 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 TMEM51Q9NW97 253 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 DDIT4Q9NX09 232 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 TPX2Q9ULW0 747 aaKnown RBP13.57□□□□□ -0.24
RTN3-207ENST00000536011 PCDHGC3Q9UN70 934 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 APOBEC2Q9Y235 224 aaKnown RBP13.57□□□□□ -0.24
RTN3-207ENST00000536011 PCDHGB2Q9Y5G2 931 aa13.57□□□□□ -0.24
RTN3-207ENST00000536011 IGF2RP11717 2491 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 A0A1B0GVM2 712 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 TCAF2A6NFQ2 919 aa13.56□□□□□ -0.24
RTN3-207ENST00000536011 LRRC72A6NJI9 287 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms