RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 ARHGAP25P42331 645 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 PLCD1P51178 756 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 FAM193AP78312 1265 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 E2F1Q01094 437 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 SLC13A2Q13183 592 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 SEMA5AQ13591 1074 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 MORC3Q14149 939 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 DAZAP2Q15038 168 aaPredicted RBP4.54□□□□□ -1.68
CD44-235ENST00000532339 CYP1B1Q16678 543 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 ST3GAL2Q16842 350 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 LY6KQ17RY6 165 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 CRY2Q49AN0 593 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 ANO6Q4KMQ2 910 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 PLA1AQ53H76 456 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 CERCAMQ5T4B2 595 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 MORC1Q86VD1 984 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 SPARTQ8N0X7 666 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 MPP5Q8N3R9 675 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 SIRT6Q8N6T7 355 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 GJA10Q969M2 543 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 PPP2R3CQ969Q6 453 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 NT5C1BQ96P26 610 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 ARPC5LQ9BPX5 153 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 ELAC2Q9BQ52 826 aaKnown RBP4.54□□□□□ -1.68
CD44-235ENST00000532339 C11orf49Q9H6J7 331 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 ZMAT3Q9HA38 289 aaKnown RBP4.54□□□□□ -1.68
CD44-235ENST00000532339 PDGFCQ9NRA1 345 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 AMFRQ9UKV5 643 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 PCDHGB6Q9Y5F9 930 aa4.54□□□□□ -1.68
CD44-235ENST00000532339 ASH1LQ9NR48 2969 aaKnown RBP4.54□□□□□ -1.68
CD44-235ENST00000532339 EDC4Q6P2E9 1401 aaKnown RBP4.54□□□□□ -1.68
CD44-235ENST00000532339 MYO15AQ9UKN7 3530 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 TCF20Q9UGU0 1960 aaKnown RBP4.53□□□□□ -1.68
CD44-235ENST00000532339 YDJCA8MPS7 323 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 AP4M1O00189 453 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 PSMD14O00487 310 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 VNN1O95497 513 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 MYL3P08590 195 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 CYP2A6P11509 494 aaPredicted RBP4.53□□□□□ -1.68
CD44-235ENST00000532339 ALADP13716 330 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 SFPQP23246 707 aaKnown RBP eCLIP4.53□□□□□ -1.68
CD44-235ENST00000532339 RENBPP51606 427 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 SUMO2P61956 95 aaKnown RBP4.53□□□□□ -1.68
CD44-235ENST00000532339 CCNIQ14094 377 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 SHHQ15465 462 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 TRIP6Q15654 476 aaKnown RBP4.53□□□□□ -1.68
CD44-235ENST00000532339 KIAA0753Q2KHM9 967 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 C10orf62Q5T681 223 aaPredicted RBP4.53□□□□□ -1.68
CD44-235ENST00000532339 PXDC1Q5TGL8 231 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 C11orf96Q7Z7L8 435 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 RAB11FIP4Q86YS3 637 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 SFTPA1Q8IWL2 248 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 PRSS3P2Q8NHM4 247 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 PARD3BQ8TEW8 1205 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 TMEM171Q8WVE6 324 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 COG3Q96JB2 828 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 FYTTD1Q96QD9 318 aaKnown RBP4.53□□□□□ -1.68
CD44-235ENST00000532339 PRR25Q96S07 402 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 C17orf80Q9BSJ5 609 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 VPS16Q9H269 839 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 NAV2Q8IVL1 2488 aa4.53□□□□□ -1.68
CD44-235ENST00000532339 LAMB1P07942 1786 aa4.53□□□□□ -1.69
CD44-235ENST00000532339 CAPN8A6NHC0 703 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 BTBD19C9JJ37 291 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 IFRD1O00458 451 aaPredicted RBP4.52□□□□□ -1.69
CD44-235ENST00000532339 GOLIM4O00461 696 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 TLR2O60603 784 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 BCAR3O75815 825 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 FPR3P25089 353 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 PEX2P28328 305 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 PRKAR1BP31321 381 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 GKP32189 559 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 ALDH5A1P51649 535 aaPredicted RBP4.52□□□□□ -1.69
CD44-235ENST00000532339 LAMB3Q13751 1172 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 RRS1Q15050 365 aaKnown RBP4.52□□□□□ -1.69
CD44-235ENST00000532339 CNN3Q15417 329 aaKnown RBP4.52□□□□□ -1.69
CD44-235ENST00000532339 FAM187BQ17R55 369 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 C4orf46Q504U0 113 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 RNASE12Q5GAN4 147 aaKnown RBP4.52□□□□□ -1.69
CD44-235ENST00000532339 LCE1AQ5T7P2 110 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 ZNF813Q6ZN06 617 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 DPY19L3Q6ZPD9 716 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 TOGARAM2Q6ZUX3 1019 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 BHLHA9Q7RTU4 235 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 ADAMTS18Q8TE60 1221 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 ZBTB9Q96C00 473 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 SUCLG2Q96I99 432 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 FAM118BQ9BPY3 351 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 TMEM79Q9BSE2 394 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 ZNF518BQ9C0D4 1074 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 SMURF2Q9HAU4 748 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 ELOVL5Q9NYP7 299 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 DAAM1Q9Y4D1 1078 aa4.52□□□□□ -1.69
CD44-235ENST00000532339 RIF1Q5UIP0 2472 aaKnown RBP4.52□□□□□ -1.69
CD44-235ENST00000532339 TMEM232C9JQI7 657 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 E5RJQ4 531 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 M0R3H8 397 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 CES2O00748 559 aa4.51□□□□□ -1.69
CD44-235ENST00000532339 PQBP1O60828 265 aaKnown RBP4.51□□□□□ -1.69
CD44-235ENST00000532339 PMPCBO75439 489 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms