RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 CEP192Q8TEP8 1941 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 A0A1B0GVT2 93 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 FAM47DPA6NHR8 397 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 E5RJQ4 531 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 GJB3O75712 270 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 LUC7L3O95232 432 aaKnown RBP15.26■□□□□ 0.03
VPS28-215ENST00000531924 FYNP06241 537 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 NNMTP40261 264 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 CSNK1EP49674 416 aaKnown RBP15.26■□□□□ 0.03
VPS28-215ENST00000531924 MEA1Q16626 185 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 TPD52L1Q16890 204 aaPredicted RBP15.26■□□□□ 0.03
VPS28-215ENST00000531924 ARHGAP44Q17R89 818 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 DCAF6Q58WW2 860 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 ZC3H12AQ5D1E8 599 aaKnown RBP15.26■□□□□ 0.03
VPS28-215ENST00000531924 GBP6Q6ZN66 633 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 BEND5Q7L4P6 421 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 ZCCHC14Q8WYQ9 949 aaKnown RBP15.26■□□□□ 0.03
VPS28-215ENST00000531924 GATA6Q92908 595 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 TTC17Q96AE7 1141 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 PRICKLE1Q96MT3 831 aaPredicted RBP15.26■□□□□ 0.03
VPS28-215ENST00000531924 NOX5Q96PH1 765 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 SLC4A5Q9BY07 1137 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 THAP9Q9H5L6 903 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 TM7SF3Q9NS93 570 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 RWDD2AQ9UIY3 292 aa15.26■□□□□ 0.03
VPS28-215ENST00000531924 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.26■□□□□ 0.03
VPS28-215ENST00000531924 F5H5T6 163 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 TRUB2O95900 331 aaKnown RBP15.25■□□□□ 0.03
VPS28-215ENST00000531924 FTH1P19P0C7X4 201 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 ZNF883P0CG24 379 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 SLC2A3P11169 496 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 ABCB4P21439 1286 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 CD27P26842 260 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 RPL34P49207 117 aaKnown RBP15.25■□□□□ 0.03
VPS28-215ENST00000531924 SNX16P57768 344 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 CDK17Q00537 523 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 ECT2LQ008S8 904 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 CAMK4Q16566 473 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 HNRNPA1L2Q32P51 320 aaKnown RBP15.25■□□□□ 0.03
VPS28-215ENST00000531924 PITRM1Q5JRX3 1037 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 SYPL2Q5VXT5 272 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 RAP1GAP2Q684P5 730 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 TRIM65Q6PJ69 517 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 DHX40Q8IX18 779 aaKnown RBP15.25■□□□□ 0.03
VPS28-215ENST00000531924 ATP6V0D2Q8N8Y2 350 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 RHBDD1Q8TEB9 315 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 BIRC7Q96CA5 298 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 SLC39A13Q96H72 371 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 BTN2A3PQ96KV6 586 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 OMDQ99983 421 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 RSPH9Q9H1X1 276 aaPredicted RBP15.25■□□□□ 0.03
VPS28-215ENST00000531924 PABPC3Q9H361 631 aaKnown RBP15.25■□□□□ 0.03
VPS28-215ENST00000531924 MTG2Q9H4K7 406 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 IL21RQ9HBE5 538 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.25■□□□□ 0.03
VPS28-215ENST00000531924 FBXL12Q9NXK8 326 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 ERVW-1Q9UQF0 538 aa15.25■□□□□ 0.03
VPS28-215ENST00000531924 PCDH15Q96QU1 1955 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 ADAMTS9Q9P2N4 1935 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 SYNJ2BP-COX16A0A087WUM0 186 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 LRRC72A6NJI9 287 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 PAPSS1O43252 624 aaPredicted RBP15.24■□□□□ 0.03
VPS28-215ENST00000531924 SIN3BO75182 1162 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 RNASEH2AO75792 299 aaKnown RBP15.24■□□□□ 0.03
VPS28-215ENST00000531924 SRPRAP08240 638 aaKnown RBP15.24■□□□□ 0.03
VPS28-215ENST00000531924 TACR2P21452 398 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 MTIF2P46199 727 aaKnown RBP15.24■□□□□ 0.03
VPS28-215ENST00000531924 C21orf59P57076 290 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 PDCLQ13371 301 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 EXOC3L4Q17RC7 722 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 KIF19Q2TAC6 998 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 FSCBQ5H9T9 825 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 RABGAP1LQ5R372 815 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 MMS22LQ6ZRQ5 1243 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 USP30Q70CQ3 517 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 RAB44Q7Z6P3 723 aaPredicted RBP15.24■□□□□ 0.03
VPS28-215ENST00000531924 TMEM110Q86TL2 294 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 PNPLA1Q8N8W4 532 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 KDM1BQ8NB78 822 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 SKA1Q96BD8 255 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 CDC6Q99741 560 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 SYNCQ9H7C4 482 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 TM9SF3Q9HD45 589 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 COX16Q9P0S2 106 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 KIAA1468Q9P260 1216 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 APEX2Q9UBZ4 518 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 PCOLCE2Q9UKZ9 415 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 ANKRD6Q9Y2G4 727 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 FNDC3AQ9Y2H6 1198 aaKnown RBP15.24■□□□□ 0.03
VPS28-215ENST00000531924 PCDHGB2Q9Y5G2 931 aa15.24■□□□□ 0.03
VPS28-215ENST00000531924 EDDM13A0A1B0GTR0 161 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 TARSL2A2RTX5 802 aaKnown RBP15.23■□□□□ 0.03
VPS28-215ENST00000531924 KCNU1A8MYU2 1149 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 FLRT2O43155 660 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 SLC9A1P19634 815 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 CCR1P32246 355 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 KRT9P35527 623 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 GRIA4P48058 902 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 OXCT1P55809 520 aa15.23■□□□□ 0.03
VPS28-215ENST00000531924 PTK2Q05397 1052 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms