RNA–Protein interactions for RNA: ENST00000531551.5

CTSB-222, Transcript of cathepsin B, human

TSL 1 (best)

Gene CTSB, Length 1,855 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSB-222	ENST00000531551	ZYG11B	Q9C0D3	744 aa		18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	BRD9	Q9H8M2	597 aa		18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	NUP210	Q8TEM1	1887 aa	Predicted RBP	18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	C3orf70	A6NLC5	250 aa	Predicted RBP	18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	NEDD8-MDP1	E9PL57	170 aa		18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	KIF2A	O00139	706 aa	Predicted RBP	18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	CNTN5	O94779	1100 aa		18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	AMPD1	P23109	780 aa		18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	IL4R	P24394	825 aa		18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	NRG1	Q02297	640 aa	Predicted RBP	18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	PDGFRL	Q15198	375 aa		18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	ANKRD20A8P	Q5CZ79	823 aa		18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	MANEAL	Q5VSG8	457 aa		18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	TFAP2D	Q7Z6R9	452 aa		18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	RFX6	Q8HWS3	928 aa		18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	ZNF683	Q8IZ20	524 aa		18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	ATP2A3	Q93084	1043 aa		18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	FAM83C	Q9BQN1	747 aa		18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	ZNF670	Q9BS34	389 aa		18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	BBS2	Q9BXC9	721 aa		18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	SNX12	Q9UMY4	172 aa		18.2	■□□□□ 0.5
CTSB-222	ENST00000531551	DOCK8	Q8NF50	2099 aa		18.19	■□□□□ 0.5
CTSB-222	ENST00000531551	CHAD	O15335	359 aa		18.19	■□□□□ 0.5
CTSB-222	ENST00000531551	CEP104	O60308	925 aa		18.19	■□□□□ 0.5
CTSB-222	ENST00000531551	NFATC1	O95644	943 aa		18.19	■□□□□ 0.5
CTSB-222	ENST00000531551	CDKN2B	P42772	138 aa		18.19	■□□□□ 0.5
CTSB-222	ENST00000531551	DYNLT1	P63172	113 aa		18.19	■□□□□ 0.5
CTSB-222	ENST00000531551	DHCR24	Q15392	516 aa		18.19	■□□□□ 0.5
CTSB-222	ENST00000531551	ALF	Q53S48	1182 aa		18.19	■□□□□ 0.5
CTSB-222	ENST00000531551	RHBDF2	Q6PJF5	856 aa		18.19	■□□□□ 0.5
CTSB-222	ENST00000531551	ADHFE1	Q8IWW8	467 aa		18.19	■□□□□ 0.5
CTSB-222	ENST00000531551	KIAA1958	Q8N8K9	716 aa		18.19	■□□□□ 0.5
CTSB-222	ENST00000531551	HJURP	Q8NCD3	748 aa	Predicted RBP	18.19	■□□□□ 0.5
CTSB-222	ENST00000531551	FAM71B	Q8TC56	605 aa		18.19	■□□□□ 0.5
CTSB-222	ENST00000531551	OSBPL9	Q96SU4	736 aa		18.19	■□□□□ 0.5
CTSB-222	ENST00000531551	CARD9	Q9H257	536 aa		18.19	■□□□□ 0.5
CTSB-222	ENST00000531551	CATSPERB	Q9H7T0	1116 aa		18.19	■□□□□ 0.5
CTSB-222	ENST00000531551	IGSF9	Q9P2J2	1179 aa		18.19	■□□□□ 0.5
CTSB-222	ENST00000531551	HELZ	P42694	1942 aa	Known RBP	18.19	■□□□□ 0.5
CTSB-222	ENST00000531551	DRGX	A6NNA5	263 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	LOC730098	B7Z3J9	87 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	ERCC2	P18074	760 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	ZNF135	P52742	658 aa	Predicted RBP	18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	TFDP3	Q5H9I0	405 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	CARNMT1	Q8N4J0	409 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	SLC44A3	Q8N4M1	653 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	ATXN2L	Q8WWM7	1075 aa	Known RBP	18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	TSC1	Q92574	1164 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	NXPE3	Q969Y0	559 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	OSBPL8	Q9BZF1	889 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	GTSE1	Q9NYZ3	720 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	RCOR3	Q9P2K3	495 aa	Predicted RBP	18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	PPARGC1A	Q9UBK2	798 aa	Known RBP	18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	IGLV3-10	A0A075B6K4	115 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	ZNF500	O60304	480 aa	Predicted RBP	18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	TUBB4A	P04350	444 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	CYP17A1	P05093	508 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	COPS2	P61201	443 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	RUNX3	Q13761	415 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	NAT16	Q8N8M0	369 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	PCDH19	Q8TAB3	1148 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	P2RY11	Q96G91	374 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	RNF157	Q96PX1	679 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	ECT2	Q9H8V3	914 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	HPS4	Q9NQG7	708 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	ARHGEF4	Q9NR80	690 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	PRKAG3	Q9UGI9	489 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	SAR1B	Q9Y6B6	198 aa		18.18	■□□□□ 0.5
CTSB-222	ENST00000531551	hCG_1818297	A0A087WSY0	165 aa		18.17	■□□□□ 0.5
CTSB-222	ENST00000531551		H0Y626	953 aa		18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	FGF10	O15520	208 aa	Predicted RBP	18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	ADH1C	P00326	375 aa		18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	TYR	P14679	529 aa		18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	HTR7	P34969	479 aa		18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	HCAR3	P49019	387 aa		18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	ZP2	Q05996	745 aa		18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	DPYS	Q14117	519 aa		18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	DNTTIP2	Q5QJE6	756 aa	Known RBP	18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	CCDC181	Q5TID7	509 aa		18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	TTC39B	Q5VTQ0	682 aa	Predicted RBP	18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	FYB2	Q5VWT5	728 aa		18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	PAPD7	Q5XG87	772 aa	Known RBP	18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	CCDC117	Q8IWD4	279 aa	Predicted RBP	18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	CPA6	Q8N4T0	437 aa		18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	COG1	Q8WTW3	980 aa		18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	PBK	Q96KB5	322 aa		18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	ASB2	Q96Q27	587 aa		18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	ETNK2	Q9NVF9	386 aa		18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	NEU3	Q9UQ49	428 aa		18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	MFHAS1	Q9Y4C4	1052 aa		18.17	■□□□□ 0.5
CTSB-222	ENST00000531551	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	18.16	■□□□□ 0.5
CTSB-222	ENST00000531551		A0A1B0GVM2	712 aa		18.16	■□□□□ 0.5
CTSB-222	ENST00000531551	TCAF2	A6NFQ2	919 aa		18.16	■□□□□ 0.5
CTSB-222	ENST00000531551	OTOL1	A6NHN0	477 aa	Predicted RBP	18.16	■□□□□ 0.5
CTSB-222	ENST00000531551	GFRA2	O00451	464 aa		18.16	■□□□□ 0.5
CTSB-222	ENST00000531551	ZNF185	O15231	689 aa		18.16	■□□□□ 0.5
CTSB-222	ENST00000531551	CST8	O60676	142 aa		18.16	■□□□□ 0.5
CTSB-222	ENST00000531551	ADH5	P11766	374 aa		18.16	■□□□□ 0.5
CTSB-222	ENST00000531551	RHOQ	P17081	205 aa		18.16	■□□□□ 0.5
CTSB-222	ENST00000531551	TCP1	P17987	556 aa	Known RBP	18.16	■□□□□ 0.5

Retrieved 100 of 20,778 RNA–protein pairs in 97.2 ms