RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	DNAJB5	O75953	348 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	OLFM2	O95897	454 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	FSHB	P01225	129 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	LINGO3	P0C6S8	592 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	GHR	P10912	638 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	EPB41	P11171	864 aa	Known RBP	5.92	□□□□□ -1.46
CD44-231	ENST00000531110	EN2	P19622	333 aa	Predicted RBP	5.92	□□□□□ -1.46
CD44-231	ENST00000531110	CALB2	P22676	271 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	PRKAR2B	P31323	418 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	CA8	P35219	290 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	WNT3	P56703	355 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	UBXN1	Q04323	297 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	LRRC74A	Q0VAA2	488 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	FHL2	Q14192	279 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	SF3B3	Q15393	1217 aa	Known RBP	5.92	□□□□□ -1.46
CD44-231	ENST00000531110	LONRF1	Q17RB8	773 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	GEN1	Q17RS7	908 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	INSC	Q1MX18	579 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	C15orf59	Q2T9L4	293 aa	Predicted RBP	5.92	□□□□□ -1.46
CD44-231	ENST00000531110	KRT71	Q3SY84	523 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	SLC44A4	Q53GD3	710 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	LACTB2	Q53H82	288 aa	Predicted RBP	5.92	□□□□□ -1.46
CD44-231	ENST00000531110	C10orf76	Q5T2E6	689 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	TMEM53	Q6P2H8	277 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	KLC3	Q6P597	504 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	SARM1	Q6SZW1	724 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	5.92	□□□□□ -1.46
CD44-231	ENST00000531110	ZNF627	Q7L945	461 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	MRGPRG	Q86SM5	289 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	C14orf80	Q86SX3	495 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	HOOK3	Q86VS8	718 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	SPATA24	Q86W54	205 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	ADGRG5	Q8IZF4	528 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	SYCP3	Q8IZU3	236 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	PAF1	Q8N7H5	531 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	NKAIN3	Q8N8D7	197 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	TOR1AIP2	Q8NFQ8	470 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	SNX19	Q92543	992 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	SGCD	Q92629	289 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	ARHGEF2	Q92974	986 aa	Known RBP	5.92	□□□□□ -1.46
CD44-231	ENST00000531110	MED30	Q96HR3	178 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	TBATA	Q96M53	351 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	C16orf45	Q96MC5	204 aa	Predicted RBP	5.92	□□□□□ -1.46
CD44-231	ENST00000531110	PSKH2	Q96QS6	385 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	HAPLN3	Q96S86	360 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	HGH1	Q9BTY7	390 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	SPATA5L1	Q9BVQ7	753 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	NAA15	Q9BXJ9	866 aa	Known RBP	5.92	□□□□□ -1.46
CD44-231	ENST00000531110	SCAND2P	Q9GZW5	306 aa	Predicted RBP	5.92	□□□□□ -1.46
CD44-231	ENST00000531110	NAT10	Q9H0A0	1025 aa	Known RBP	5.92	□□□□□ -1.46
CD44-231	ENST00000531110	OSBPL5	Q9H0X9	879 aa	Predicted RBP	5.92	□□□□□ -1.46
CD44-231	ENST00000531110	ARMT1	Q9H993	441 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	ZMAT3	Q9HA38	289 aa	Known RBP	5.92	□□□□□ -1.46
CD44-231	ENST00000531110	SEPT11	Q9NVA2	429 aa	Known RBP	5.92	□□□□□ -1.46
CD44-231	ENST00000531110	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	5.92	□□□□□ -1.46
CD44-231	ENST00000531110	AATF	Q9NY61	560 aa	Known RBP eCLIP	5.92	□□□□□ -1.46
CD44-231	ENST00000531110	PCDHA6	Q9UN73	950 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	CAPN7	Q9Y6W3	813 aa		5.92	□□□□□ -1.46
CD44-231	ENST00000531110	SPECC1L-ADORA2A	F8WAN1	911 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	MYO1F	O00160	1098 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	TOR1B	O14657	336 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	TPP1	O14773	563 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	HAT1	O14929	419 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	TEX28	O15482	410 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	USO1	O60763	962 aa	Known RBP	5.91	□□□□□ -1.46
CD44-231	ENST00000531110	CBFA2T3	O75081	653 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	GFPT2	O94808	682 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	BAIAP3	O94812	1187 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	UBL4A	P11441	157 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	CYP2C9	P11712	490 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	NPR1	P16066	1061 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	HDC	P19113	662 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	PSMA4	P25789	261 aa	Known RBP	5.91	□□□□□ -1.46
CD44-231	ENST00000531110	KCNJ5	P48544	419 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	GPC3	P51654	580 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	ALDH18A1	P54886	795 aa	Known RBP	5.91	□□□□□ -1.46
CD44-231	ENST00000531110	AP2B1	P63010	937 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	OLR1	P78380	273 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	FPGS	Q05932	587 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	KLF10	Q13118	480 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	ITGA7	Q13683	1181 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	GRM3	Q14832	879 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	POLD3	Q15054	466 aa	Predicted RBP	5.91	□□□□□ -1.46
CD44-231	ENST00000531110	CNN3	Q15417	329 aa	Known RBP	5.91	□□□□□ -1.46
CD44-231	ENST00000531110	ZCWPW2	Q504Y3	356 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	HYI	Q5T013	277 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	ARMC4	Q5T2S8	1044 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	DEPDC1	Q5TB30	811 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	LAIR1	Q6GTX8	287 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	GALNT17	Q6IS24	598 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	ZSCAN25	Q6NSZ9	544 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	CYB5D1	Q6P9G0	228 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	RSRC2	Q7L4I2	434 aa	Known RBP	5.91	□□□□□ -1.46
CD44-231	ENST00000531110	ERICH1	Q86X53	443 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	WDR75	Q8IWA0	830 aa	Known RBP	5.91	□□□□□ -1.46
CD44-231	ENST00000531110	USP38	Q8NB14	1042 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	PSD4	Q8NDX1	1056 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	CNNM3	Q8NE01	707 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	IL31RA	Q8NI17	732 aa		5.91	□□□□□ -1.46
CD44-231	ENST00000531110	AFAP1L1	Q8TED9	768 aa		5.91	□□□□□ -1.46

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