RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 LRRC45Q96CN5 670 aa21.87■■□□□ 1.09
VPS28-212ENST00000530836 FMO2Q99518 471 aa21.87■■□□□ 1.09
VPS28-212ENST00000530836 TMPRSS4Q9NRS4 437 aa21.87■■□□□ 1.09
VPS28-212ENST00000530836 GRHL1Q9NZI5 618 aa21.87■■□□□ 1.09
VPS28-212ENST00000530836 USP15Q9Y4E8 981 aaPredicted RBP21.87■■□□□ 1.09
VPS28-212ENST00000530836 ZNF638Q14966 1978 aaKnown RBP21.86■■□□□ 1.09
VPS28-212ENST00000530836 H7C0C1 242 aa21.86■■□□□ 1.09
VPS28-212ENST00000530836 I6L893 689 aaPredicted RBP21.86■■□□□ 1.09
VPS28-212ENST00000530836 MSI1O43347 362 aaKnown RBP21.86■■□□□ 1.09
VPS28-212ENST00000530836 ATP5C1P36542 298 aaKnown RBP21.86■■□□□ 1.09
VPS28-212ENST00000530836 TNNT3P45378 269 aaPredicted RBP21.86■■□□□ 1.09
VPS28-212ENST00000530836 ATP5OP48047 213 aa21.86■■□□□ 1.09
VPS28-212ENST00000530836 EFEMP1Q12805 493 aa21.86■■□□□ 1.09
VPS28-212ENST00000530836 PTCRAQ6ISU1 281 aaPredicted RBP21.86■■□□□ 1.09
VPS28-212ENST00000530836 ATP6V0D2Q8N8Y2 350 aa21.86■■□□□ 1.09
VPS28-212ENST00000530836 ART4Q93070 314 aa21.86■■□□□ 1.09
VPS28-212ENST00000530836 RIPOR3Q96MK2 946 aa21.86■■□□□ 1.09
VPS28-212ENST00000530836 FERMT1Q9BQL6 677 aa21.86■■□□□ 1.09
VPS28-212ENST00000530836 FUT8Q9BYC5 575 aa21.86■■□□□ 1.09
VPS28-212ENST00000530836 MAGEB5Q9BZ81 275 aa21.86■■□□□ 1.09
VPS28-212ENST00000530836 VIPAS39Q9H9C1 493 aa21.86■■□□□ 1.09
VPS28-212ENST00000530836 PIDD1Q9HB75 910 aa21.86■■□□□ 1.09
VPS28-212ENST00000530836 CDH22Q9UJ99 828 aa21.86■■□□□ 1.09
VPS28-212ENST00000530836 DNMT3LQ9UJW3 386 aa21.86■■□□□ 1.09
VPS28-212ENST00000530836 HBS1LQ9Y450 684 aaKnown RBP21.86■■□□□ 1.09
VPS28-212ENST00000530836 ZNF840PA6NDX5 716 aa21.85■■□□□ 1.09
VPS28-212ENST00000530836 DCLK1O15075 740 aa21.85■■□□□ 1.09
VPS28-212ENST00000530836 NCAM2O15394 837 aa21.85■■□□□ 1.09
VPS28-212ENST00000530836 PAGE1O75459 146 aa21.85■■□□□ 1.09
VPS28-212ENST00000530836 IVDP26440 423 aa21.85■■□□□ 1.09
VPS28-212ENST00000530836 SERPINB6P35237 376 aa21.85■■□□□ 1.09
VPS28-212ENST00000530836 MTHFRP42898 656 aa21.85■■□□□ 1.09
VPS28-212ENST00000530836 PABPC1LQ4VXU2 614 aaKnown RBP21.85■■□□□ 1.09
VPS28-212ENST00000530836 HECTD3Q5T447 861 aa21.85■■□□□ 1.09
VPS28-212ENST00000530836 C4orf22Q6V702 233 aa21.85■■□□□ 1.09
VPS28-212ENST00000530836 MREGQ8N565 214 aa21.85■■□□□ 1.09
VPS28-212ENST00000530836 FCRL2Q96LA5 508 aaPredicted RBP21.85■■□□□ 1.09
VPS28-212ENST00000530836 NECTIN4Q96NY8 510 aa21.85■■□□□ 1.09
VPS28-212ENST00000530836 ACBD3Q9H3P7 528 aa21.85■■□□□ 1.09
VPS28-212ENST00000530836 ZDHHC18Q9NUE0 388 aa21.85■■□□□ 1.09
VPS28-212ENST00000530836 NUDT5Q9UKK9 219 aa21.85■■□□□ 1.09
VPS28-212ENST00000530836 MTCL1Q9Y4B5 1905 aaKnown RBP21.85■■□□□ 1.09
VPS28-212ENST00000530836 FAM72CH0Y354 149 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 FGF10O15520 208 aaPredicted RBP21.84■■□□□ 1.09
VPS28-212ENST00000530836 IGLV3-27P01718 113 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 ERCC2P18074 760 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 PLTPP55058 493 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 CASP8Q14790 479 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 FAM72AQ5TYM5 149 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 FAM72DQ6L9T8 149 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 DNAJB7Q7Z6W7 309 aaPredicted RBP21.84■■□□□ 1.09
VPS28-212ENST00000530836 PCGF5Q86SE9 256 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 ZC3H18Q86VM9 953 aaKnown RBP21.84■■□□□ 1.09
VPS28-212ENST00000530836 FAM72BQ86X60 149 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 ELMOD1Q8N336 334 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 RTP4Q96DX8 246 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 BTN2A3PQ96KV6 586 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 BRD8Q9H0E9 1235 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 DONSONQ9NYP3 566 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 DTLQ9NZJ0 730 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 FAM50BQ9Y247 325 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 MAP2K7O14733 419 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 LRIG2O94898 1065 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 IFNB1P01574 187 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 PTPN2P17706 415 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 EPHB2P29323 1055 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 HOXC13P31276 330 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 ACTN2P35609 894 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 MLLT6P55198 1093 aaPredicted RBP21.84■■□□□ 1.09
VPS28-212ENST00000530836 GBE1Q04446 702 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 CBX2Q14781 532 aaPredicted RBP21.84■■□□□ 1.09
VPS28-212ENST00000530836 PDK1Q15118 436 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 SMAD2Q15796 467 aaKnown RBP21.84■■□□□ 1.09
VPS28-212ENST00000530836 SLC45A4Q5BKX6 768 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 NUGGCQ68CJ6 796 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 CEP128Q6ZU80 1094 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 UNC45BQ8IWX7 931 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 OLFM3Q96PB7 478 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 ASB2Q96Q27 587 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 FOXP3Q9BZS1 431 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 CATSPERBQ9H7T0 1116 aa21.84■■□□□ 1.09
VPS28-212ENST00000530836 DNMT3BQ9UBC3 853 aaKnown RBP21.84■■□□□ 1.09
VPS28-212ENST00000530836 SMAPO00193 183 aa21.83■■□□□ 1.08
VPS28-212ENST00000530836 PPP1R12AO14974 1030 aaPredicted RBP21.83■■□□□ 1.08
VPS28-212ENST00000530836 KCNQ1P51787 676 aa21.83■■□□□ 1.08
VPS28-212ENST00000530836 TRIP13Q15645 432 aaPredicted RBP21.83■■□□□ 1.08
VPS28-212ENST00000530836 ZDHHC24Q6UX98 284 aa21.83■■□□□ 1.08
VPS28-212ENST00000530836 GRASPQ7Z6J2 395 aaPredicted RBP21.83■■□□□ 1.08
VPS28-212ENST00000530836 FBXO25Q8TCJ0 367 aa21.83■■□□□ 1.08
VPS28-212ENST00000530836 TBC1D31Q96DN5 1066 aa21.83■■□□□ 1.08
VPS28-212ENST00000530836 NACA2Q9H009 215 aa21.83■■□□□ 1.08
VPS28-212ENST00000530836 CCSER2Q9H7U1 834 aa21.83■■□□□ 1.08
VPS28-212ENST00000530836 HCFC1R1Q9NWW0 138 aa21.83■■□□□ 1.08
VPS28-212ENST00000530836 ANAPC5Q9UJX4 755 aa21.83■■□□□ 1.08
VPS28-212ENST00000530836 CLUHO75153 1309 aa21.83■■□□□ 1.08
VPS28-212ENST00000530836 SLC12A8A0AV02 714 aa21.82■■□□□ 1.08
VPS28-212ENST00000530836 TBX18O95935 607 aa21.82■■□□□ 1.08
VPS28-212ENST00000530836 FAM153BP0C7A2 387 aa21.82■■□□□ 1.08
VPS28-212ENST00000530836 MX2P20592 715 aa21.82■■□□□ 1.08
VPS28-212ENST00000530836 COG7P83436 770 aa21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms