RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 IRX2Q9BZI1 471 aaPredicted RBP11.03□□□□□ -0.64
CD44-227ENST00000528086 RTN4Q9NQC3 1192 aaKnown RBP11.03□□□□□ -0.64
CD44-227ENST00000528086 PRSS16Q9NQE7 514 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 ARHGEF38Q9NXL2 777 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 COX16Q9P0S2 106 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 USP36Q9P275 1121 aaKnown RBP11.03□□□□□ -0.64
CD44-227ENST00000528086 ZNF212Q9UDV6 495 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 CYP8B1Q9UNU6 501 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 OR51B4Q9Y5P0 310 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 SLCO1B1Q9Y6L6 691 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 PCNX2A6NKB5 2137 aa11.03□□□□□ -0.64
CD44-227ENST00000528086 DCDC2BA2VCK2 349 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 M0QYT0 321 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 CDX4O14627 284 aaPredicted RBP11.02□□□□□ -0.65
CD44-227ENST00000528086 CAPN9O14815 690 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 PAGE1O75459 146 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 CNTN5O94779 1100 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 ALDH1A2O94788 518 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 LSM8O95777 96 aaKnown RBP11.02□□□□□ -0.65
CD44-227ENST00000528086 IGLV3-19P01714 112 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 DLDP09622 509 aaKnown RBP11.02□□□□□ -0.65
CD44-227ENST00000528086 ITPKAP23677 461 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 GBP1P32455 592 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 SCNN1AP37088 669 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 RNASE9P60153 205 aaKnown RBP11.02□□□□□ -0.65
CD44-227ENST00000528086 IRX4P78413 519 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 CDK17Q00537 523 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 CREB5Q02930 508 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 LMNB2Q03252 620 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 UBXN1Q04323 297 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 NME3Q13232 169 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 AUHQ13825 339 aaKnown RBP11.02□□□□□ -0.65
CD44-227ENST00000528086 ALFQ53S48 1182 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 PITRM1Q5JRX3 1037 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 PEAR1Q5VY43 1037 aaPredicted RBP11.02□□□□□ -0.65
CD44-227ENST00000528086 CHSY1Q86X52 802 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 ERICH1Q86X53 443 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 DNAAF5Q86Y56 855 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 TMPRSS6Q8IU80 811 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 CARNMT1Q8N4J0 409 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 GPR161Q8N6U8 529 aaKnown RBP11.02□□□□□ -0.65
CD44-227ENST00000528086 EMC1Q8N766 993 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 WFIKKN2Q8TEU8 576 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 GOLGA1Q92805 767 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 TTYH3Q9C0H2 523 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 FAM204AQ9H8W3 233 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 FSCN3Q9NQT6 498 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 ITM2CQ9NQX7 267 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.02□□□□□ -0.65
CD44-227ENST00000528086 BCCIPQ9P287 314 aaKnown RBP eCLIP11.02□□□□□ -0.65
CD44-227ENST00000528086 SLCO3A1Q9UIG8 710 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 PILRBQ9UKJ0 227 aa11.02□□□□□ -0.65
CD44-227ENST00000528086 LNP1A1A4G5 178 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 GOLGA8SH3BPF8 625 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 RNF103O00237 685 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 SLC30A4O14863 429 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 TIMM44O43615 452 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 RHOBTB1O94844 696 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 ENDOD1O94919 500 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 CAVIN2O95810 425 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 APOEP02649 317 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 VAV1P15498 845 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 DHPSP49366 369 aaPredicted RBP11.01□□□□□ -0.65
CD44-227ENST00000528086 STK19P49842 368 aaPredicted RBP11.01□□□□□ -0.65
CD44-227ENST00000528086 TPMTP51580 245 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 RPS14P62263 151 aaKnown RBP11.01□□□□□ -0.65
CD44-227ENST00000528086 PUM1Q14671 1186 aaKnown RBP eCLIP11.01□□□□□ -0.65
CD44-227ENST00000528086 ELF2Q15723 593 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 KLHL40Q2TBA0 621 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 PLEKHG6Q3KR16 790 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 FAM102AQ5T9C2 384 aaPredicted RBP11.01□□□□□ -0.65
CD44-227ENST00000528086 NUDT18Q6ZVK8 323 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 METTL3Q86U44 580 aaKnown RBP11.01□□□□□ -0.65
CD44-227ENST00000528086 CACUL1Q86Y37 369 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 ZDHHC17Q8IUH5 632 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 MFN1Q8IWA4 741 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 AHI1Q8N157 1196 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 CCAR2Q8N163 923 aaKnown RBP11.01□□□□□ -0.65
CD44-227ENST00000528086 PGBD3Q8N328 593 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 C1orf216Q8TAB5 229 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 ZNF419Q96HQ0 510 aaPredicted RBP11.01□□□□□ -0.65
CD44-227ENST00000528086 CFAP57Q96MR6 1250 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 NOX5Q96PH1 765 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 PRDM16Q9HAZ2 1276 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 CBX8Q9HC52 389 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 VPS45Q9NRW7 570 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 WSB2Q9NYS7 404 aaPredicted RBP11.01□□□□□ -0.65
CD44-227ENST00000528086 TAS2R14Q9NYV8 317 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.01□□□□□ -0.65
CD44-227ENST00000528086 VANGL2Q9ULK5 521 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 NEU3Q9UQ49 428 aa11.01□□□□□ -0.65
CD44-227ENST00000528086 ATXN2Q99700 1313 aaKnown RBP11.01□□□□□ -0.65
CD44-227ENST00000528086 PLXNA2O75051 1894 aa11□□□□□ -0.65
CD44-227ENST00000528086 A0A1B0GTH6 734 aa11□□□□□ -0.65
CD44-227ENST00000528086 SYCE3A1L190 88 aa11□□□□□ -0.65
CD44-227ENST00000528086 C2CD4BA6NLJ0 364 aa11□□□□□ -0.65
CD44-227ENST00000528086 TTC34A8MYJ7 566 aa11□□□□□ -0.65
CD44-227ENST00000528086 PRR5-ARHGAP8B1AHC4 643 aa11□□□□□ -0.65
CD44-227ENST00000528086 NPC1O15118 1278 aa11□□□□□ -0.65
CD44-227ENST00000528086 EPHX1P07099 455 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms