RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	C14orf80	Q86SX3	495 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	CCDC117	Q8IWD4	279 aa	Predicted RBP	21.41	■■□□□ 1.02
CD44-222	ENST00000526025	TERB1	Q8NA31	727 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	FIBIN	Q8TAL6	211 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	BHMT	Q93088	406 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	IGSF8	Q969P0	613 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	CLDN23	Q96B33	292 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	PPP1R9B	Q96SB3	815 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	SNRNP25	Q9BV90	132 aa	Known RBP	21.41	■■□□□ 1.02
CD44-222	ENST00000526025	C1QTNF1	Q9BXJ1	281 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	TSGA10	Q9BZW7	698 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	LACRT	Q9GZZ8	138 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	PLK2	Q9NYY3	685 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	PCSK1N	Q9UHG2	260 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	AP4E1	Q9UPM8	1137 aa		21.41	■■□□□ 1.02
CD44-222	ENST00000526025	MYO18A	Q92614	2054 aa	Known RBP	21.4	■■□□□ 1.02
CD44-222	ENST00000526025	KAT7	O95251	611 aa		21.4	■■□□□ 1.02
CD44-222	ENST00000526025	TARS	P26639	723 aa	Known RBP	21.4	■■□□□ 1.02
CD44-222	ENST00000526025	NOP2	P46087	812 aa	Known RBP	21.4	■■□□□ 1.02
CD44-222	ENST00000526025	SLC6A11	P48066	632 aa		21.4	■■□□□ 1.02
CD44-222	ENST00000526025	CDH4	P55283	916 aa		21.4	■■□□□ 1.02
CD44-222	ENST00000526025	MESD	Q14696	234 aa		21.4	■■□□□ 1.02
CD44-222	ENST00000526025	POLN	Q7Z5Q5	900 aa		21.4	■■□□□ 1.02
CD44-222	ENST00000526025	MFN1	Q8IWA4	741 aa		21.4	■■□□□ 1.02
CD44-222	ENST00000526025	NAT16	Q8N8M0	369 aa		21.4	■■□□□ 1.02
CD44-222	ENST00000526025	WFIKKN2	Q8TEU8	576 aa		21.4	■■□□□ 1.02
CD44-222	ENST00000526025	EPAS1	Q99814	870 aa		21.4	■■□□□ 1.02
CD44-222	ENST00000526025	IER2	Q9BTL4	223 aa		21.4	■■□□□ 1.02
CD44-222	ENST00000526025	ZYG11B	Q9C0D3	744 aa		21.4	■■□□□ 1.02
CD44-222	ENST00000526025	ARHGEF4	Q9NR80	690 aa		21.4	■■□□□ 1.02
CD44-222	ENST00000526025	FAM170B	A6NMN3	283 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	LRIG2	O94898	1065 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	KRT7	P08729	469 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	CCDC175	P0C221	793 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	CHRNB1	P11230	501 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	AOC1	P19801	751 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	CD72	P21854	359 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	IL1R2	P27930	398 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	GGCX	P38435	758 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	TNFRSF4	P43489	277 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	RPS9	P46781	194 aa	Known RBP	21.39	■■□□□ 1.01
CD44-222	ENST00000526025	CDH18	Q13634	790 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	UBXN2B	Q14CS0	331 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	DPYSL2	Q16555	572 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	IFI16	Q16666	785 aa	Known RBP	21.39	■■□□□ 1.01
CD44-222	ENST00000526025	LRRC38	Q5VT99	294 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	NAIF1	Q69YI7	327 aa	Predicted RBP	21.39	■■□□□ 1.01
CD44-222	ENST00000526025	ANKS1B	Q7Z6G8	1248 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	21.39	■■□□□ 1.01
CD44-222	ENST00000526025	CCDC105	Q8IYK2	499 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	CCAR2	Q8N163	923 aa	Known RBP	21.39	■■□□□ 1.01
CD44-222	ENST00000526025	CFAP52	Q8N1V2	620 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	KCNV2	Q8TDN2	545 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	PBXIP1	Q96AQ6	731 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	TBC1D31	Q96DN5	1066 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	FOXQ1	Q9C009	403 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	FBRSL1	Q9HCM7	1045 aa	Known RBP	21.39	■■□□□ 1.01
CD44-222	ENST00000526025	C11orf16	Q9NQ32	467 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	TFR2	Q9UP52	801 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	NEU3	Q9UQ49	428 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	TBC1D30	Q9Y2I9	924 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	STARD13	Q9Y3M8	1113 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	SIT1	Q9Y3P8	196 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	SNX10	Q9Y5X0	201 aa		21.39	■■□□□ 1.01
CD44-222	ENST00000526025	PRR33	A8MZF0	331 aa		21.38	■■□□□ 1.01
CD44-222	ENST00000526025	BUB1B	O60566	1050 aa	Predicted RBP	21.38	■■□□□ 1.01
CD44-222	ENST00000526025	PDGFB	P01127	241 aa	Predicted RBP	21.38	■■□□□ 1.01
CD44-222	ENST00000526025	HCAR3	P49019	387 aa		21.38	■■□□□ 1.01
CD44-222	ENST00000526025	FZD5	Q13467	585 aa		21.38	■■□□□ 1.01
CD44-222	ENST00000526025	SLC12A1	Q13621	1099 aa		21.38	■■□□□ 1.01
CD44-222	ENST00000526025	DMC1	Q14565	340 aa		21.38	■■□□□ 1.01
CD44-222	ENST00000526025	EIF4H	Q15056	248 aa	Known RBP	21.38	■■□□□ 1.01
CD44-222	ENST00000526025	E2F5	Q15329	346 aa		21.38	■■□□□ 1.01
CD44-222	ENST00000526025	ASTL	Q6HA08	431 aa	Predicted RBP	21.38	■■□□□ 1.01
CD44-222	ENST00000526025	FBXL6	Q8N531	539 aa		21.38	■■□□□ 1.01
CD44-222	ENST00000526025	RNF10	Q8N5U6	811 aa	Known RBP	21.38	■■□□□ 1.01
CD44-222	ENST00000526025	FLCN	Q8NFG4	579 aa		21.38	■■□□□ 1.01
CD44-222	ENST00000526025	TPCN2	Q8NHX9	752 aa		21.38	■■□□□ 1.01
CD44-222	ENST00000526025	FAM71B	Q8TC56	605 aa		21.38	■■□□□ 1.01
CD44-222	ENST00000526025	LMLN	Q96KR4	655 aa		21.38	■■□□□ 1.01
CD44-222	ENST00000526025	DHX35	Q9H5Z1	703 aa	Known RBP	21.38	■■□□□ 1.01
CD44-222	ENST00000526025	STIM2	Q9P246	746 aa		21.38	■■□□□ 1.01
CD44-222	ENST00000526025	ZNF212	Q9UDV6	495 aa		21.38	■■□□□ 1.01
CD44-222	ENST00000526025	SALL4	Q9UJQ4	1053 aa		21.38	■■□□□ 1.01
CD44-222	ENST00000526025	CLEC4E	Q9ULY5	219 aa		21.38	■■□□□ 1.01
CD44-222	ENST00000526025	NDRG2	Q9UN36	371 aa	Known RBP	21.38	■■□□□ 1.01
CD44-222	ENST00000526025	KMT2E	Q8IZD2	1858 aa		21.37	■■□□□ 1.01
CD44-222	ENST00000526025	FAM72C	H0Y354	149 aa		21.37	■■□□□ 1.01
CD44-222	ENST00000526025	DLL1	O00548	723 aa		21.37	■■□□□ 1.01
CD44-222	ENST00000526025	FGF10	O15520	208 aa	Predicted RBP	21.37	■■□□□ 1.01
CD44-222	ENST00000526025	TIMM44	O43615	452 aa		21.37	■■□□□ 1.01
CD44-222	ENST00000526025	RARA	P10276	462 aa		21.37	■■□□□ 1.01
CD44-222	ENST00000526025	TCF4	P15884	667 aa		21.37	■■□□□ 1.01
CD44-222	ENST00000526025	RHOQ	P17081	205 aa		21.37	■■□□□ 1.01
CD44-222	ENST00000526025	HLA-F	P30511	346 aa		21.37	■■□□□ 1.01
CD44-222	ENST00000526025	KDSR	Q06136	332 aa		21.37	■■□□□ 1.01
CD44-222	ENST00000526025	FAM72A	Q5TYM5	149 aa		21.37	■■□□□ 1.01
CD44-222	ENST00000526025	DAB2IP	Q5VWQ8	1189 aa		21.37	■■□□□ 1.01
CD44-222	ENST00000526025	FAM72D	Q6L9T8	149 aa		21.37	■■□□□ 1.01
CD44-222	ENST00000526025	SETD3	Q86TU7	594 aa	Predicted RBP	21.37	■■□□□ 1.01

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