RNA–Protein interactions for RNA: ENST00000502394.1

MATR3-231, Transcript of matrin 3, human

TSL 4

Gene MATR3, Length 589 nt, Biotype non stop decay, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-231	ENST00000502394	GPR158	Q5T848	1215 aa		12.54	□□□□□ -0.4
MATR3-231	ENST00000502394	TTC27	Q6P3X3	843 aa		12.54	□□□□□ -0.4
MATR3-231	ENST00000502394	NLRP14	Q86W24	1093 aa		12.54	□□□□□ -0.4
MATR3-231	ENST00000502394	CMTM8	Q8IZV2	173 aa		12.54	□□□□□ -0.4
MATR3-231	ENST00000502394	ITFG1	Q8TB96	612 aa		12.54	□□□□□ -0.4
MATR3-231	ENST00000502394	NKD2	Q969F2	451 aa	Predicted RBP	12.54	□□□□□ -0.4
MATR3-231	ENST00000502394	TBC1D31	Q96DN5	1066 aa		12.54	□□□□□ -0.4
MATR3-231	ENST00000502394	MYEOV	Q96EZ4	313 aa		12.54	□□□□□ -0.4
MATR3-231	ENST00000502394	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	12.54	□□□□□ -0.4
MATR3-231	ENST00000502394	NACA2	Q9H009	215 aa		12.54	□□□□□ -0.4
MATR3-231	ENST00000502394	KLC2	Q9H0B6	622 aa		12.54	□□□□□ -0.4
MATR3-231	ENST00000502394	DDX47	Q9H0S4	455 aa	Known RBP	12.54	□□□□□ -0.4
MATR3-231	ENST00000502394	S1PR5	Q9H228	398 aa		12.54	□□□□□ -0.4
MATR3-231	ENST00000502394	SLITRK6	Q9H5Y7	841 aa		12.54	□□□□□ -0.4
MATR3-231	ENST00000502394	PPARGC1A	Q9UBK2	798 aa	Known RBP	12.54	□□□□□ -0.4
MATR3-231	ENST00000502394	ZNF212	Q9UDV6	495 aa		12.54	□□□□□ -0.4
MATR3-231	ENST00000502394	SLC12A6	Q9UHW9	1150 aa		12.54	□□□□□ -0.4
MATR3-231	ENST00000502394	C2orf16	Q68DN1	1984 aa		12.54	□□□□□ -0.4
MATR3-231	ENST00000502394	GOLGA6L10	A0A0M3HER8	536 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	GOLGA8CP	A6NN73	597 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	LIAS	O43766	372 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	TBX10	O75333	385 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	ZFX	P17010	805 aa	Predicted RBP	12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	TACR2	P21452	398 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	CORO1A	P31146	461 aa	Known RBP	12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	SLC6A4	P31645	630 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	CHRNA3	P32297	505 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	COIL	P38432	576 aa	Predicted RBP	12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	PTGIR	P43119	386 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	HARS2	P49590	506 aa	Known RBP	12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	OTUD4	Q01804	1114 aa	Known RBP	12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	SLC10A2	Q12908	348 aa	Predicted RBP	12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	USP4	Q13107	963 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	OASL	Q15646	514 aa	Known RBP	12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	RAP1GAP2	Q684P5	730 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	FBXL22	Q6P050	247 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	NPNT	Q6UXI9	565 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	HTR3D	Q70Z44	454 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	RIN3	Q8TB24	985 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	ACTL9	Q8TC94	416 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	C1orf54	Q8WWF1	131 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	ATG4A	Q8WYN0	398 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	SLCO2A1	Q92959	643 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	OLFM3	Q96PB7	478 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	MAK16	Q9BXY0	300 aa	Known RBP	12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	SIK2	Q9H0K1	926 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	HOMER3	Q9NSC5	361 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	SMPD4	Q9NXE4	827 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	PCYOX1	Q9UHG3	505 aa		12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	AGO1	Q9UL18	857 aa	Known RBP	12.53	□□□□□ -0.4
MATR3-231	ENST00000502394	HELZ	P42694	1942 aa	Known RBP	12.52	□□□□□ -0.4
MATR3-231	ENST00000502394	GOLGA6L7	A0A1B0GV03	622 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	LEFTY2	O00292	366 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	FGF10	O15520	208 aa	Predicted RBP	12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	MFSD11	O43934	449 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	PRAMEF12	O95522	483 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	CKM	P06732	381 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	SRGAP2B	P0DMP2	458 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	IRF1	P10914	325 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	EPHB2	P29323	1055 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	LTBR	P36941	435 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	SLC11A2	P49281	568 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	IRAK1	P51617	712 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	VCP	P55072	806 aa	Known RBP	12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	DYNLT1	P63172	113 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	TUBB4B	P68371	445 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	GBE1	Q04446	702 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	DLX2	Q07687	328 aa	Predicted RBP	12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	ZNF77	Q15935	545 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	AFMID	Q63HM1	303 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	CHSY1	Q86X52	802 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	DENND1C	Q8IV53	801 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	USP13	Q92995	863 aa	Predicted RBP	12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	IGSF8	Q969P0	613 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	MAGOHB	Q96A72	148 aa	Known RBP	12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	HAUS1	Q96CS2	278 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	LRCH3	Q96II8	777 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	MSLNL	Q96KJ4	702 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	ZSWIM3	Q96MP5	696 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	PRICKLE1	Q96MT3	831 aa	Predicted RBP	12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	KRT12	Q99456	494 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	ADAM7	Q9H2U9	754 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	PIDD1	Q9HB75	910 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	DTL	Q9NZJ0	730 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	SAE1	Q9UBE0	346 aa	Predicted RBP	12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	CDH22	Q9UJ99	828 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	DNPEP	Q9ULA0	475 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	CCL26	Q9Y258	94 aa		12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	DRG1	Q9Y295	367 aa	Known RBP	12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	MRPS23	Q9Y3D9	190 aa	Known RBP	12.52	□□□□□ -0.41
MATR3-231	ENST00000502394	RAD51C	O43502	376 aa		12.51	□□□□□ -0.41
MATR3-231	ENST00000502394	RHOQ	P17081	205 aa		12.51	□□□□□ -0.41
MATR3-231	ENST00000502394	NR2C2	P49116	596 aa		12.51	□□□□□ -0.41
MATR3-231	ENST00000502394	TERF1	P54274	439 aa		12.51	□□□□□ -0.41
MATR3-231	ENST00000502394	GLE1	Q53GS7	698 aa	Known RBP	12.51	□□□□□ -0.41
MATR3-231	ENST00000502394	TEX35	Q5T0J7	233 aa		12.51	□□□□□ -0.41
MATR3-231	ENST00000502394	ADGRF1	Q5T601	910 aa		12.51	□□□□□ -0.41
MATR3-231	ENST00000502394	RNF43	Q68DV7	783 aa		12.51	□□□□□ -0.41
MATR3-231	ENST00000502394	DDX42	Q86XP3	938 aa	Known RBP eCLIP	12.51	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms