RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 FAM118BQ9BPY3 351 aa13.05□□□□□ -0.32
VPS52-220ENST00000493674 RHOXF2Q9BQY4 288 aa13.05□□□□□ -0.32
VPS52-220ENST00000493674 SLC46A2Q9BY10 475 aa13.05□□□□□ -0.32
VPS52-220ENST00000493674 NACA2Q9H009 215 aa13.05□□□□□ -0.32
VPS52-220ENST00000493674 SIK2Q9H0K1 926 aa13.05□□□□□ -0.32
VPS52-220ENST00000493674 EPC1Q9H2F5 836 aa13.05□□□□□ -0.32
VPS52-220ENST00000493674 ATXN3LQ9H3M9 355 aa13.05□□□□□ -0.32
VPS52-220ENST00000493674 GDF3Q9NR23 364 aa13.05□□□□□ -0.32
VPS52-220ENST00000493674 GKN1Q9NS71 199 aa13.05□□□□□ -0.32
VPS52-220ENST00000493674 SLC12A6Q9UHW9 1150 aa13.05□□□□□ -0.32
VPS52-220ENST00000493674 ARHGAP26Q9UNA1 814 aa13.05□□□□□ -0.32
VPS52-220ENST00000493674 MCF2LO15068 1137 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 HEXIM1O94992 359 aaKnown RBP13.04□□□□□ -0.32
VPS52-220ENST00000493674 HMBSP08397 361 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 GJA1P17302 382 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 TACR2P21452 398 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 EPHB2P29323 1055 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 WEE1P30291 646 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 CORO1AP31146 461 aaKnown RBP13.04□□□□□ -0.32
VPS52-220ENST00000493674 SLC6A4P31645 630 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 HARS2P49590 506 aaKnown RBP13.04□□□□□ -0.32
VPS52-220ENST00000493674 IRAK1P51617 712 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 EIF3EP60228 445 aaKnown RBP13.04□□□□□ -0.32
VPS52-220ENST00000493674 MRPS25P82663 173 aaKnown RBP13.04□□□□□ -0.32
VPS52-220ENST00000493674 SNX1Q13596 522 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 PTK6Q13882 451 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 PRKD1Q15139 912 aaPredicted RBP13.04□□□□□ -0.32
VPS52-220ENST00000493674 TEAD2Q15562 447 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 TCEAL5Q5H9L2 206 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 DUPD1Q68J44 220 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 CCDC70Q6NSX1 233 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 FBXL22Q6P050 247 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 POTEHQ6S545 545 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 TMCO3Q6UWJ1 677 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 RTL3Q8N8U3 475 aaKnown RBP13.04□□□□□ -0.32
VPS52-220ENST00000493674 MAB21L3Q8N8X9 362 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 QKIQ96PU8 341 aaKnown RBP eCLIP13.04□□□□□ -0.32
VPS52-220ENST00000493674 TRIM51Q9BSJ1 452 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 RETREG1Q9H6L5 497 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 TASP1Q9H6P5 420 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 TRPC7Q9HCX4 862 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 TMEM248Q9NWD8 314 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 CPQQ9Y646 472 aa13.04□□□□□ -0.32
VPS52-220ENST00000493674 COL4A2P08572 1712 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 BCLAF3A2AJT9 711 aaKnown RBP13.03□□□□□ -0.32
VPS52-220ENST00000493674 ZSCAN5CA6NGD5 496 aaPredicted RBP13.03□□□□□ -0.32
VPS52-220ENST00000493674 HACD1B0YJ81 288 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 ZNF197O14709 1029 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 ECEL1O95672 775 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 CKMP06732 381 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 TUBBP07437 444 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 RBP3P10745 1247 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 RHOQP17081 205 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 CEBPBP17676 345 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 SERPINB6P35237 376 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 SLC11A2P49281 568 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 DRG2P55039 364 aaKnown RBP13.03□□□□□ -0.32
VPS52-220ENST00000493674 NTHL1P78549 312 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 SLC7A5Q01650 507 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 LMNB2Q03252 620 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 GALNT2Q10471 571 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 ADGRE1Q14246 886 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 GPR158Q5T848 1215 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 RAP1GAP2Q684P5 730 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 RNF43Q68DV7 783 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 SYCE2Q6PIF2 218 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 C1orf228Q6PIY5 440 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 HTR3DQ70Z44 454 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 GRASPQ7Z6J2 395 aaPredicted RBP13.03□□□□□ -0.32
VPS52-220ENST00000493674 GPR149Q86SP6 731 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 ARHGAP12Q8IWW6 846 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 CCDC105Q8IYK2 499 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 CMTM8Q8IZV2 173 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 LZTR1Q8N653 840 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 C12orf76Q8N812 135 aaPredicted RBP13.03□□□□□ -0.32
VPS52-220ENST00000493674 MAFAQ8NHW3 353 aaPredicted RBP13.03□□□□□ -0.32
VPS52-220ENST00000493674 SMG7Q92540 1137 aaKnown RBP13.03□□□□□ -0.32
VPS52-220ENST00000493674 IGSF8Q969P0 613 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 MYEOVQ96EZ4 313 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 PRICKLE1Q96MT3 831 aaPredicted RBP13.03□□□□□ -0.32
VPS52-220ENST00000493674 ERP44Q9BS26 406 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 PARD6BQ9BYG5 372 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 CATSPERBQ9H7T0 1116 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 USP29Q9HBJ7 922 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 FEZ2Q9UHY8 353 aaPredicted RBP13.03□□□□□ -0.32
VPS52-220ENST00000493674 AGO1Q9UL18 857 aaKnown RBP13.03□□□□□ -0.32
VPS52-220ENST00000493674 VANGL2Q9ULK5 521 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 HEY1Q9Y5J3 304 aa13.03□□□□□ -0.32
VPS52-220ENST00000493674 SPTBN5Q9NRC6 3674 aaKnown RBP13.03□□□□□ -0.32
VPS52-220ENST00000493674 TICRRQ7Z2Z1 1910 aa13.02□□□□□ -0.32
VPS52-220ENST00000493674 GOLGA6L7A0A1B0GV03 622 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 CFAP69A5D8W1 941 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 DYNC1I1O14576 645 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 LINC01565O15544 149 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 DAPK3O43293 454 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 GAS8O95995 478 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 SRGAP2BP0DMP2 458 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 H2AFXP16104 143 aaPredicted RBP13.02□□□□□ -0.33
VPS52-220ENST00000493674 IVDP26440 423 aa13.02□□□□□ -0.33
VPS52-220ENST00000493674 VSNL1P62760 191 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms