RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 MEGF6O75095 1541 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 NEXMIFQ5QGS0 1516 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 SPATA31A1Q5TZJ5 1347 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 CROCC2H7BZ55 1655 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 A0A087WZ62 844 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 J3KTA2 159 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 PPEF2O14830 753 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 KCNQ3O43525 872 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 BCAR3O75815 825 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 GLP2RO95838 553 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 FGBP02675 491 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 GABRB3P28472 473 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 HTR7P34969 479 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 TM4SF4P48230 202 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 HSPA7P48741 367 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 SLC12A2P55011 1212 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 KRTAP10-11P60412 298 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 MTAPQ13126 283 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 MTA1Q13330 715 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 KLF9Q13886 244 aaPredicted RBP2.48□□□□□ -2.01
HMGB1-208ENST00000490788 DAZAP2Q15038 168 aaPredicted RBP2.48□□□□□ -2.01
HMGB1-208ENST00000490788 RABEP1Q15276 862 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 ELF2Q15723 593 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 SLC35G1Q2M3R5 365 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 ZNF569Q5MCW4 686 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 ZNF793Q6ZN11 406 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 KIAA0408Q6ZU52 694 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 BHLHA9Q7RTU4 235 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 GATAD2AQ86YP4 633 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 CLASRPQ8N2M8 674 aaKnown RBP2.48□□□□□ -2.01
HMGB1-208ENST00000490788 SRFBP1Q8NEF9 429 aaKnown RBP2.48□□□□□ -2.01
HMGB1-208ENST00000490788 OR52L2PQ8NGH6 319 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 DEPTORQ8TB45 409 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 PIGOQ8TEQ8 1089 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 PNISRQ8TF01 805 aaKnown RBP2.48□□□□□ -2.01
HMGB1-208ENST00000490788 HMCESQ96FZ2 354 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 FAR2Q96K12 515 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 ZNF778Q96MU6 729 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 FCRL4Q96PJ5 515 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 WDR24Q96S15 920 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 CHMP4BQ9H444 224 aaKnown RBP2.48□□□□□ -2.01
HMGB1-208ENST00000490788 PRDM16Q9HAZ2 1276 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 AS3MTQ9HBK9 375 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 NECTIN3Q9NQS3 549 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 ABHD10Q9NUJ1 306 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 ASNSD1Q9NWL6 643 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 BCCIPQ9P287 314 aaKnown RBP eCLIP2.48□□□□□ -2.01
HMGB1-208ENST00000490788 SLC39A10Q9ULF5 831 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 BTBD3Q9Y2F9 522 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 UBE2J1Q9Y385 318 aaPredicted RBP2.48□□□□□ -2.01
HMGB1-208ENST00000490788 SIRT4Q9Y6E7 314 aaPredicted RBP2.48□□□□□ -2.01
HMGB1-208ENST00000490788 DCCP43146 1447 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 PLXNC1O60486 1568 aa2.48□□□□□ -2.01
HMGB1-208ENST00000490788 SYCP2Q9BX26 1530 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 ADAMTS7Q9UKP4 1686 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 NPHP3Q7Z494 1330 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 ERVK-7P63135 1459 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 FYCO1Q9BQS8 1478 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 USP32Q8NFA0 1604 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 ARHGEF17Q96PE2 2063 aaPredicted RBP2.47□□□□□ -2.01
HMGB1-208ENST00000490788 E5RJQ4 531 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 FCHO1O14526 889 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 PIP5K1BO14986 540 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 NPC1O15118 1278 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 PLAUP00749 431 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 TMEM191BP0C7N4 346 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 ABCB4P21439 1286 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 SCP2P22307 547 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 AKT1P31749 480 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 CCT4P50991 539 aaKnown RBP2.47□□□□□ -2.01
HMGB1-208ENST00000490788 YPEL5P62699 121 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 SSBP2P81877 361 aaPredicted RBP2.47□□□□□ -2.01
HMGB1-208ENST00000490788 RAB30Q15771 203 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 MPEG1Q2M385 716 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 ANXA2RQ3ZCQ2 193 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 Q4G0T1 1027 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 LCE1EQ5T753 118 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 ANKRD40Q6AI12 368 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 ZNF425Q6IV72 752 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 RINT1Q6NUQ1 792 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 ACSM6Q6P461 480 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 DHRS13Q6UX07 377 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 NRSN1Q8IZ57 195 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 ADGRF4Q8IZF3 695 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 ZNF398Q8TD17 642 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 IPO4Q8TEX9 1081 aaKnown RBP2.47□□□□□ -2.01
HMGB1-208ENST00000490788 KIAA1191Q96A73 305 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 PRR11Q96HE9 360 aaPredicted RBP2.47□□□□□ -2.01
HMGB1-208ENST00000490788 SGCZQ96LD1 299 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 FCRL5Q96RD9 977 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 SIGLEC11Q96RL6 698 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 PRPF18Q99633 342 aaKnown RBP2.47□□□□□ -2.01
HMGB1-208ENST00000490788 HTATIP2Q9BUP3 242 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 SCNM1Q9BWG6 230 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 TTLL2Q9BWV7 592 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 C1QTNF7Q9BXJ2 289 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 STK33Q9BYT3 514 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 CDCP1Q9H5V8 836 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 EPS8L2Q9H6S3 715 aa2.47□□□□□ -2.01
HMGB1-208ENST00000490788 ELOVL5Q9NYP7 299 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms