RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 CHSY1Q86X52 802 aa23.39■■□□□ 1.33
PTPN4-211ENST00000488279 FAM114A1Q8IWE2 563 aa23.39■■□□□ 1.33
PTPN4-211ENST00000488279 ATP6V0D2Q8N8Y2 350 aa23.39■■□□□ 1.33
PTPN4-211ENST00000488279 KDM1BQ8NB78 822 aa23.39■■□□□ 1.33
PTPN4-211ENST00000488279 BTBD1Q9H0C5 482 aa23.39■■□□□ 1.33
PTPN4-211ENST00000488279 EIF2B4Q9UI10 523 aaKnown RBP23.39■■□□□ 1.33
PTPN4-211ENST00000488279 DNAJC12Q9UKB3 198 aa23.39■■□□□ 1.33
PTPN4-211ENST00000488279 INTS6Q9UL03 887 aaKnown RBP23.39■■□□□ 1.33
PTPN4-211ENST00000488279 WASF3Q9UPY6 502 aa23.39■■□□□ 1.33
PTPN4-211ENST00000488279 CEP295Q9C0D2 2601 aa23.39■■□□□ 1.33
PTPN4-211ENST00000488279 SPAARA0A1B0GVQ0 90 aa23.38■■□□□ 1.33
PTPN4-211ENST00000488279 KCNU1A8MYU2 1149 aa23.38■■□□□ 1.33
PTPN4-211ENST00000488279 GJB3O75712 270 aa23.38■■□□□ 1.33
PTPN4-211ENST00000488279 TACR2P21452 398 aa23.38■■□□□ 1.33
PTPN4-211ENST00000488279 RDXP35241 583 aaKnown RBP23.38■■□□□ 1.33
PTPN4-211ENST00000488279 KRT9P35527 623 aa23.38■■□□□ 1.33
PTPN4-211ENST00000488279 EIF4EBP2Q13542 120 aaPredicted RBP23.38■■□□□ 1.33
PTPN4-211ENST00000488279 MAN2A1Q16706 1144 aa23.38■■□□□ 1.33
PTPN4-211ENST00000488279 HNRNPA1L2Q32P51 320 aaKnown RBP23.38■■□□□ 1.33
PTPN4-211ENST00000488279 PITRM1Q5JRX3 1037 aa23.38■■□□□ 1.33
PTPN4-211ENST00000488279 ZNF776Q68DI1 518 aaPredicted RBP23.38■■□□□ 1.33
PTPN4-211ENST00000488279 MMS22LQ6ZRQ5 1243 aa23.38■■□□□ 1.33
PTPN4-211ENST00000488279 PASD1Q8IV76 773 aa23.38■■□□□ 1.33
PTPN4-211ENST00000488279 DEFB106AQ8N104 65 aa23.38■■□□□ 1.33
PTPN4-211ENST00000488279 SNX19Q92543 992 aa23.38■■□□□ 1.33
PTPN4-211ENST00000488279 MYO19Q96H55 970 aa23.38■■□□□ 1.33
PTPN4-211ENST00000488279 CPXM1Q96SM3 734 aa23.38■■□□□ 1.33
PTPN4-211ENST00000488279 CLSTN2Q9H4D0 955 aa23.38■■□□□ 1.33
PTPN4-211ENST00000488279 C6orf106Q9H6K1 298 aaPredicted RBP23.38■■□□□ 1.33
PTPN4-211ENST00000488279 FAM204AQ9H8W3 233 aa23.38■■□□□ 1.33
PTPN4-211ENST00000488279 ASNSD1Q9NWL6 643 aa23.38■■□□□ 1.33
PTPN4-211ENST00000488279 SCML1Q9UN30 329 aa23.38■■□□□ 1.33
PTPN4-211ENST00000488279 CKAP5Q14008 2032 aa23.38■■□□□ 1.33
PTPN4-211ENST00000488279 CACNA1BQ00975 2339 aa23.37■■□□□ 1.33
PTPN4-211ENST00000488279 F5H5T6 163 aa23.37■■□□□ 1.33
PTPN4-211ENST00000488279 FOXN3O00409 490 aaPredicted RBP23.37■■□□□ 1.33
PTPN4-211ENST00000488279 RNASEH1O60930 286 aaKnown RBP23.37■■□□□ 1.33
PTPN4-211ENST00000488279 HSF2BPO75031 334 aa23.37■■□□□ 1.33
PTPN4-211ENST00000488279 KRT37O76014 449 aa23.37■■□□□ 1.33
PTPN4-211ENST00000488279 SRPRAP08240 638 aaKnown RBP23.37■■□□□ 1.33
PTPN4-211ENST00000488279 ABCB4P21439 1286 aa23.37■■□□□ 1.33
PTPN4-211ENST00000488279 CCR1P32246 355 aa23.37■■□□□ 1.33
PTPN4-211ENST00000488279 PITX1P78337 314 aaPredicted RBP23.37■■□□□ 1.33
PTPN4-211ENST00000488279 IL27RAQ6UWB1 636 aa23.37■■□□□ 1.33
PTPN4-211ENST00000488279 C1orf216Q8TAB5 229 aa23.37■■□□□ 1.33
PTPN4-211ENST00000488279 RNF34Q969K3 372 aa23.37■■□□□ 1.33
PTPN4-211ENST00000488279 MRGPRX3Q96LB0 322 aa23.37■■□□□ 1.33
PTPN4-211ENST00000488279 SLC2A13Q96QE2 648 aa23.37■■□□□ 1.33
PTPN4-211ENST00000488279 RSPH9Q9H1X1 276 aaPredicted RBP23.37■■□□□ 1.33
PTPN4-211ENST00000488279 MTG2Q9H4K7 406 aa23.37■■□□□ 1.33
PTPN4-211ENST00000488279 SGK2Q9HBY8 427 aa23.37■■□□□ 1.33
PTPN4-211ENST00000488279 SIX2Q9NPC8 291 aa23.37■■□□□ 1.33
PTPN4-211ENST00000488279 DDIT4Q9NX09 232 aa23.37■■□□□ 1.33
PTPN4-211ENST00000488279 ERVW-1Q9UQF0 538 aa23.37■■□□□ 1.33
PTPN4-211ENST00000488279 NCKAP1Q9Y2A7 1128 aa23.37■■□□□ 1.33
PTPN4-211ENST00000488279 CEP83Q9Y592 693 aa23.37■■□□□ 1.33
PTPN4-211ENST00000488279 KMT2BQ9UMN6 2715 aaPredicted RBP23.37■■□□□ 1.33
PTPN4-211ENST00000488279 PCDH15Q96QU1 1955 aa23.36■■□□□ 1.33
PTPN4-211ENST00000488279 SEMA4FO95754 770 aa23.36■■□□□ 1.33
PTPN4-211ENST00000488279 TOP3BO95985 862 aaKnown RBP23.36■■□□□ 1.33
PTPN4-211ENST00000488279 PRKCSHP14314 528 aaPredicted RBP23.36■■□□□ 1.33
PTPN4-211ENST00000488279 SPINK2P20155 84 aa23.36■■□□□ 1.33
PTPN4-211ENST00000488279 ERCC5P28715 1186 aaPredicted RBP23.36■■□□□ 1.33
PTPN4-211ENST00000488279 ECT2LQ008S8 904 aa23.36■■□□□ 1.33
PTPN4-211ENST00000488279 SFSWAPQ12872 951 aaKnown RBP23.36■■□□□ 1.33
PTPN4-211ENST00000488279 ARID5BQ14865 1188 aa23.36■■□□□ 1.33
PTPN4-211ENST00000488279 VWA3BQ502W6 1294 aa23.36■■□□□ 1.33
PTPN4-211ENST00000488279 RNF219Q5W0B1 726 aaPredicted RBP23.36■■□□□ 1.33
PTPN4-211ENST00000488279 C11orf57Q6ZUT1 292 aaPredicted RBP23.36■■□□□ 1.33
PTPN4-211ENST00000488279 GANCQ8TET4 914 aa23.36■■□□□ 1.33
PTPN4-211ENST00000488279 SCNM1Q9BWG6 230 aa23.36■■□□□ 1.33
PTPN4-211ENST00000488279 NDST4Q9H3R1 872 aa23.36■■□□□ 1.33
PTPN4-211ENST00000488279 DACH1Q9UI36 760 aa23.36■■□□□ 1.33
PTPN4-211ENST00000488279 ZBTB32Q9Y2Y4 487 aaPredicted RBP23.36■■□□□ 1.33
PTPN4-211ENST00000488279 PCDHB9Q9Y5E1 797 aa23.36■■□□□ 1.33
PTPN4-211ENST00000488279 ADAMTS9Q9P2N4 1935 aa23.35■■□□□ 1.33
PTPN4-211ENST00000488279 MAP1BP46821 2468 aaKnown RBP23.35■■□□□ 1.33
PTPN4-211ENST00000488279 SYNJ2BP-COX16A0A087WUM0 186 aa23.35■■□□□ 1.33
PTPN4-211ENST00000488279 TARSL2A2RTX5 802 aaKnown RBP23.35■■□□□ 1.33
PTPN4-211ENST00000488279 SH3BP5O60239 455 aa23.35■■□□□ 1.33
PTPN4-211ENST00000488279 SIN3BO75182 1162 aa23.35■■□□□ 1.33
PTPN4-211ENST00000488279 GRAP2O75791 330 aa23.35■■□□□ 1.33
PTPN4-211ENST00000488279 CLCN1P35523 988 aa23.35■■□□□ 1.33
PTPN4-211ENST00000488279 AFF3P51826 1226 aaKnown RBP23.35■■□□□ 1.33
PTPN4-211ENST00000488279 BPIFB4P59827 614 aa23.35■■□□□ 1.33
PTPN4-211ENST00000488279 OR6B2Q6IFH4 312 aa23.35■■□□□ 1.33
PTPN4-211ENST00000488279 USP30Q70CQ3 517 aa23.35■■□□□ 1.33
PTPN4-211ENST00000488279 SLC47A2Q86VL8 602 aa23.35■■□□□ 1.33
PTPN4-211ENST00000488279 DHX40Q8IX18 779 aaKnown RBP23.35■■□□□ 1.33
PTPN4-211ENST00000488279 C1orf131Q8NDD1 294 aaKnown RBP23.35■■□□□ 1.33
PTPN4-211ENST00000488279 TUBGCP2Q9BSJ2 902 aa23.35■■□□□ 1.33
PTPN4-211ENST00000488279 SYNCQ9H7C4 482 aa23.35■■□□□ 1.33
PTPN4-211ENST00000488279 COX16Q9P0S2 106 aa23.35■■□□□ 1.33
PTPN4-211ENST00000488279 AJAP1Q9UKB5 411 aaPredicted RBP23.35■■□□□ 1.33
PTPN4-211ENST00000488279 PCNX2A6NKB5 2137 aa23.35■■□□□ 1.33
PTPN4-211ENST00000488279 CER1O95813 267 aa23.34■■□□□ 1.33
PTPN4-211ENST00000488279 PROS1P07225 676 aa23.34■■□□□ 1.33
PTPN4-211ENST00000488279 CTSOP43234 321 aaPredicted RBP23.34■■□□□ 1.33
PTPN4-211ENST00000488279 FAM193AP78312 1265 aa23.34■■□□□ 1.33
PTPN4-211ENST00000488279 MTA1Q13330 715 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms