RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 SDE2Q6IQ49 451 aa18.6■□□□□ 0.57
HDAC6-225ENST00000483506 DNAJC24Q6P3W2 148 aa18.6■□□□□ 0.57
HDAC6-225ENST00000483506 CHST9Q7L1S5 443 aa18.6■□□□□ 0.57
HDAC6-225ENST00000483506 STRADAQ7RTN6 431 aa18.6■□□□□ 0.57
HDAC6-225ENST00000483506 ZNF683Q8IZ20 524 aa18.6■□□□□ 0.57
HDAC6-225ENST00000483506 CFAP52Q8N1V2 620 aa18.6■□□□□ 0.57
HDAC6-225ENST00000483506 RNF214Q8ND24 703 aa18.6■□□□□ 0.57
HDAC6-225ENST00000483506 MDGA1Q8NFP4 955 aa18.6■□□□□ 0.57
HDAC6-225ENST00000483506 SELENOOQ9BVL4 669 aa18.6■□□□□ 0.57
HDAC6-225ENST00000483506 CACNA2D2Q9NY47 1150 aa18.6■□□□□ 0.57
HDAC6-225ENST00000483506 STIM2Q9P246 746 aa18.6■□□□□ 0.57
HDAC6-225ENST00000483506 LUC7L2Q9Y383 392 aaKnown RBP18.6■□□□□ 0.57
HDAC6-225ENST00000483506 STON1Q9Y6Q2 735 aa18.6■□□□□ 0.57
HDAC6-225ENST00000483506 A0A1B0GVM2 712 aa18.59■□□□□ 0.57
HDAC6-225ENST00000483506 TCAF2A6NFQ2 919 aa18.59■□□□□ 0.57
HDAC6-225ENST00000483506 RPP40O75818 363 aaKnown RBP18.59■□□□□ 0.57
HDAC6-225ENST00000483506 GJB6O95452 261 aa18.59■□□□□ 0.57
HDAC6-225ENST00000483506 RRM1P23921 792 aa18.59■□□□□ 0.57
HDAC6-225ENST00000483506 HNRNPH3P31942 346 aaKnown RBP18.59■□□□□ 0.57
HDAC6-225ENST00000483506 IL12RB1P42701 662 aa18.59■□□□□ 0.57
HDAC6-225ENST00000483506 ZNF234Q14588 700 aa18.59■□□□□ 0.57
HDAC6-225ENST00000483506 FUT11Q495W5 492 aa18.59■□□□□ 0.57
HDAC6-225ENST00000483506 ARTNQ5T4W7 220 aa18.59■□□□□ 0.57
HDAC6-225ENST00000483506 MBLAC2Q68D91 279 aa18.59■□□□□ 0.57
HDAC6-225ENST00000483506 ANO7Q6IWH7 933 aa18.59■□□□□ 0.57
HDAC6-225ENST00000483506 WDR59Q6PJI9 974 aa18.59■□□□□ 0.57
HDAC6-225ENST00000483506 PHLDB2Q86SQ0 1253 aa18.59■□□□□ 0.57
HDAC6-225ENST00000483506 CARNMT1Q8N4J0 409 aa18.59■□□□□ 0.57
HDAC6-225ENST00000483506 IGSF8Q969P0 613 aa18.59■□□□□ 0.57
HDAC6-225ENST00000483506 TTC17Q96AE7 1141 aa18.59■□□□□ 0.57
HDAC6-225ENST00000483506 HAPLN3Q96S86 360 aa18.59■□□□□ 0.57
HDAC6-225ENST00000483506 IGLV3-10A0A075B6K4 115 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 TCRBV21S2A2A0A5A6 115 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 SERPING1P05155 500 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 DLDP09622 509 aaKnown RBP18.58■□□□□ 0.56
HDAC6-225ENST00000483506 C7P10643 843 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 SKILP12757 684 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 GPD1P21695 349 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 ATP11AP98196 1134 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 SRSF5Q13243 272 aaKnown RBP18.58■□□□□ 0.56
HDAC6-225ENST00000483506 TRIM14Q14142 442 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 SIM2Q14190 667 aaPredicted RBP18.58■□□□□ 0.56
HDAC6-225ENST00000483506 ARID5BQ14865 1188 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 PTPRNQ16849 979 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 C15orf59Q2T9L4 293 aaPredicted RBP18.58■□□□□ 0.56
HDAC6-225ENST00000483506 FSCBQ5H9T9 825 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 SPECC1LQ69YQ0 1117 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 PLEKHA7Q6IQ23 1121 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 SARM1Q6SZW1 724 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 C14orf80Q86SX3 495 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 VSTM4Q8IW00 320 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 CCDC117Q8IWD4 279 aaPredicted RBP18.58■□□□□ 0.56
HDAC6-225ENST00000483506 CCAR2Q8N163 923 aaKnown RBP18.58■□□□□ 0.56
HDAC6-225ENST00000483506 SORCS1Q8WY21 1168 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 RPRD1AQ96P16 312 aaPredicted RBP18.58■□□□□ 0.56
HDAC6-225ENST00000483506 CIPCQ9C0C6 399 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 ISCUQ9H1K1 167 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 KIAA1522Q9P206 1035 aaPredicted RBP18.58■□□□□ 0.56
HDAC6-225ENST00000483506 INTS6Q9UL03 887 aaKnown RBP18.58■□□□□ 0.56
HDAC6-225ENST00000483506 VANGL2Q9ULK5 521 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 DOCK4Q8N1I0 1966 aa18.58■□□□□ 0.56
HDAC6-225ENST00000483506 DRGXA6NNA5 263 aa18.57■□□□□ 0.56
HDAC6-225ENST00000483506 RTN2O75298 545 aa18.57■□□□□ 0.56
HDAC6-225ENST00000483506 ATP5BP06576 529 aaKnown RBP18.57■□□□□ 0.56
HDAC6-225ENST00000483506 CASP14P31944 242 aa18.57■□□□□ 0.56
HDAC6-225ENST00000483506 WASP42768 502 aa18.57■□□□□ 0.56
HDAC6-225ENST00000483506 ZNF143P52747 638 aaPredicted RBP18.57■□□□□ 0.56
HDAC6-225ENST00000483506 PLK1P53350 603 aa18.57■□□□□ 0.56
HDAC6-225ENST00000483506 OXCT1P55809 520 aa18.57■□□□□ 0.56
HDAC6-225ENST00000483506 HDAC4P56524 1084 aa18.57■□□□□ 0.56
HDAC6-225ENST00000483506 NRG1Q02297 640 aaPredicted RBP18.57■□□□□ 0.56
HDAC6-225ENST00000483506 MAMLD1Q13495 774 aa18.57■□□□□ 0.56
HDAC6-225ENST00000483506 SLC12A1Q13621 1099 aa18.57■□□□□ 0.56
HDAC6-225ENST00000483506 SH3PXD2AQ5TCZ1 1133 aa18.57■□□□□ 0.56
HDAC6-225ENST00000483506 LAIR1Q6GTX8 287 aa18.57■□□□□ 0.56
HDAC6-225ENST00000483506 CXorf57Q6NSI4 855 aaKnown RBP18.57■□□□□ 0.56
HDAC6-225ENST00000483506 KIAA1211LQ6NV74 962 aa18.57■□□□□ 0.56
HDAC6-225ENST00000483506 FAM131BQ86XD5 332 aa18.57■□□□□ 0.56
HDAC6-225ENST00000483506 DRC7Q8IY82 874 aa18.57■□□□□ 0.56
HDAC6-225ENST00000483506 ZC3H10Q96K80 434 aaKnown RBP18.57■□□□□ 0.56
HDAC6-225ENST00000483506 SIK2Q9H0K1 926 aa18.57■□□□□ 0.56
HDAC6-225ENST00000483506 TMEM245Q9H330 911 aa18.57■□□□□ 0.56
HDAC6-225ENST00000483506 PTPRZ1P23471 2315 aaPredicted RBP18.57■□□□□ 0.56
HDAC6-225ENST00000483506 WASH3PC4AMC7 463 aa18.56■□□□□ 0.56
HDAC6-225ENST00000483506 H0Y626 953 aa18.56■□□□□ 0.56
HDAC6-225ENST00000483506 CLDN11O75508 207 aa18.56■□□□□ 0.56
HDAC6-225ENST00000483506 FTLP02792 175 aaPredicted RBP18.56■□□□□ 0.56
HDAC6-225ENST00000483506 ASLP04424 464 aa18.56■□□□□ 0.56
HDAC6-225ENST00000483506 GABRG2P18507 467 aa18.56■□□□□ 0.56
HDAC6-225ENST00000483506 POLR2EP19388 210 aaKnown RBP18.56■□□□□ 0.56
HDAC6-225ENST00000483506 PRKCHP24723 683 aa18.56■□□□□ 0.56
HDAC6-225ENST00000483506 GGCXP38435 758 aa18.56■□□□□ 0.56
HDAC6-225ENST00000483506 IRAK1P51617 712 aa18.56■□□□□ 0.56
HDAC6-225ENST00000483506 CDH4P55283 916 aa18.56■□□□□ 0.56
HDAC6-225ENST00000483506 RPL7AP62424 266 aaKnown RBP18.56■□□□□ 0.56
HDAC6-225ENST00000483506 PLEKHG6Q3KR16 790 aa18.56■□□□□ 0.56
HDAC6-225ENST00000483506 USP39Q53GS9 565 aaKnown RBP18.56■□□□□ 0.56
HDAC6-225ENST00000483506 RAB6CQ53S08 254 aa18.56■□□□□ 0.56
HDAC6-225ENST00000483506 TDRD12Q587J7 1177 aaKnown RBP18.56■□□□□ 0.56
HDAC6-225ENST00000483506 PITRM1Q5JRX3 1037 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms