RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 HCAR3P49019 387 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 SGSHP51688 502 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 RPS24P62847 133 aaKnown RBP12.62□□□□□ -0.39
SDC1-206ENST00000482879 TNK2Q07912 1038 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 NR1H3Q13133 447 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 MMRN1Q13201 1228 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 DHCR24Q15392 516 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 ANO4Q32M45 955 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 C5orf22Q49AR2 442 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 MANEALQ5VSG8 457 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 MFSD7Q6UXD7 560 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 SYT10Q6XYQ8 523 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 SPOCD1Q6ZMY3 1216 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 RFX8Q6ZV50 586 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 HJURPQ8NCD3 748 aaPredicted RBP12.62□□□□□ -0.39
SDC1-206ENST00000482879 TSC1Q92574 1164 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 BHMTQ93088 406 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 PRICKLE1Q96MT3 831 aaPredicted RBP12.62□□□□□ -0.39
SDC1-206ENST00000482879 PSMB7Q99436 277 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 BBS2Q9BXC9 721 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 MAK16Q9BXY0 300 aaKnown RBP12.62□□□□□ -0.39
SDC1-206ENST00000482879 ZYG11BQ9C0D3 744 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 HPS4Q9NQG7 708 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 MPP6Q9NZW5 540 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 RCOR3Q9P2K3 495 aaPredicted RBP12.62□□□□□ -0.39
SDC1-206ENST00000482879 PPARGC1AQ9UBK2 798 aaKnown RBP12.62□□□□□ -0.39
SDC1-206ENST00000482879 DNAI1Q9UI46 699 aa12.62□□□□□ -0.39
SDC1-206ENST00000482879 F5P12259 2224 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 IGLV3-10A0A075B6K4 115 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 ESPNB1AK53 854 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 NEDD8-MDP1E9PL57 170 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 CNTN5O94779 1100 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 ADH1CP00326 375 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 CYP17A1P05093 508 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 PYGMP11217 842 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 AMPD1P23109 780 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 IL4RP24394 825 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 CDKN2BP42772 138 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 IRAK1P51617 712 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 COPS2P61201 443 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 ZNF211Q13398 564 aaPredicted RBP12.61□□□□□ -0.39
SDC1-206ENST00000482879 RUNX3Q13761 415 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 LLGL1Q15334 1064 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 ALFQ53S48 1182 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 ANKRD20A8PQ5CZ79 823 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 ARTNQ5T4W7 220 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 TTC39BQ5VTQ0 682 aaPredicted RBP12.61□□□□□ -0.39
SDC1-206ENST00000482879 CIR1Q86X95 450 aaPredicted RBP12.61□□□□□ -0.39
SDC1-206ENST00000482879 CPA6Q8N4T0 437 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 TTC8Q8TAM2 541 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 CSGALNACT1Q8TDX6 532 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 CSPG4P5Q96PW8 444 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 RNF157Q96PX1 679 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 ZNF670Q9BS34 389 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 CATSPERBQ9H7T0 1116 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 ECT2Q9H8V3 914 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 PLK2Q9NYY3 685 aa12.61□□□□□ -0.39
SDC1-206ENST00000482879 COL6A3P12111 3177 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.6□□□□□ -0.39
SDC1-206ENST00000482879 A0A1B0GVM2 712 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 TCAF2A6NFQ2 919 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 OTOL1A6NHN0 477 aaPredicted RBP12.6□□□□□ -0.39
SDC1-206ENST00000482879 C19orf67A6NJJ6 358 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 ZNF487B1APH4 448 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 KIF2AO00139 706 aaPredicted RBP12.6□□□□□ -0.39
SDC1-206ENST00000482879 FGF10O15520 208 aaPredicted RBP12.6□□□□□ -0.39
SDC1-206ENST00000482879 CLDN11O75508 207 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 TUBB4AP04350 444 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 ADH5P11766 374 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 TYRP14679 529 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 RHOQP17081 205 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 ERCC2P18074 760 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 HOXC13P31276 330 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 CXCR5P32302 372 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 CDH4P55283 916 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 GAD2Q05329 585 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 ZNF177Q13360 481 aaPredicted RBP12.6□□□□□ -0.39
SDC1-206ENST00000482879 TDGQ13569 410 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 DPYSQ14117 519 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 TAZQ16635 292 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 ITPRIPL2Q3MIP1 535 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 TFDP3Q5H9I0 405 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 MPP7Q5T2T1 576 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 SEL1L2Q5TEA6 688 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 DCAF12L1Q5VU92 463 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 FYB2Q5VWT5 728 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 KAZNQ674X7 775 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 AADACL2Q6P093 401 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 ANKS1BQ7Z6G8 1248 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 TFAP2DQ7Z6R9 452 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 VSIG1Q86XK7 387 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 RFX6Q8HWS3 928 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 CCDC117Q8IWD4 279 aaPredicted RBP12.6□□□□□ -0.39
SDC1-206ENST00000482879 CARNMT1Q8N4J0 409 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 PCDH19Q8TAB3 1148 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.6□□□□□ -0.39
SDC1-206ENST00000482879 FAF2Q96CS3 445 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 P2RY11Q96G91 374 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 PBKQ96KB5 322 aa12.6□□□□□ -0.39
SDC1-206ENST00000482879 CARD9Q9H257 536 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms