RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 UMODL1-AS1Q8N2C9 162 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 PYROXD2Q8N2H3 581 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 EIF1ADQ8N9N8 165 aaKnown RBP10.47□□□□□ -0.73
USP39-215ENST00000481409 SLC35B2Q8TB61 432 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 FATE1Q969F0 183 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 ACSF2Q96CM8 615 aaPredicted RBP10.47□□□□□ -0.73
USP39-215ENST00000481409 TCEAL4Q96EI5 215 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 CYP2S1Q96SQ9 504 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 AP1M1Q9BXS5 423 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 FAM129AQ9BZQ8 928 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 RAB17Q9H0T7 212 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 RBM12Q9NTZ6 932 aaKnown RBP10.47□□□□□ -0.73
USP39-215ENST00000481409 CDH7Q9ULB5 785 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 NEU3Q9UQ49 428 aa10.47□□□□□ -0.73
USP39-215ENST00000481409 DOCK4Q8N1I0 1966 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 A0A1B0GVM2 712 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 BCLAF3A2AJT9 711 aaKnown RBP10.46□□□□□ -0.73
USP39-215ENST00000481409 TCAF2A6NFQ2 919 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 FAM72CH0Y354 149 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 GFRA2O00451 464 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 CTIFO43310 598 aaKnown RBP10.46□□□□□ -0.73
USP39-215ENST00000481409 ECEL1O95672 775 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 KLKB1P03952 638 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 CYBBP04839 570 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 HMBSP08397 361 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 AMPD1P23109 780 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 DRG2P55039 364 aaKnown RBP10.46□□□□□ -0.73
USP39-215ENST00000481409 VCPP55072 806 aaKnown RBP10.46□□□□□ -0.73
USP39-215ENST00000481409 OTUD4Q01804 1114 aaKnown RBP10.46□□□□□ -0.73
USP39-215ENST00000481409 OASLQ15646 514 aaKnown RBP10.46□□□□□ -0.73
USP39-215ENST00000481409 ZNF77Q15935 545 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 PARP15Q460N3 678 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 MPPE1Q53F39 396 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 FAM133BQ5BKY9 247 aaKnown RBP10.46□□□□□ -0.73
USP39-215ENST00000481409 TMCO4Q5TGY1 634 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 FAM72AQ5TYM5 149 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 NADSYN1Q6IA69 706 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 FAM72DQ6L9T8 149 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 TIGD7Q6NT04 549 aaPredicted RBP10.46□□□□□ -0.73
USP39-215ENST00000481409 RWDD4Q6NW29 188 aaKnown RBP10.46□□□□□ -0.73
USP39-215ENST00000481409 ANKS1BQ7Z6G8 1248 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 NLRP14Q86W24 1093 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 FAM72BQ86X60 149 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 CDKL3Q8IVW4 592 aaPredicted RBP10.46□□□□□ -0.73
USP39-215ENST00000481409 ARID3BQ8IVW6 561 aaPredicted RBP10.46□□□□□ -0.73
USP39-215ENST00000481409 CCDC117Q8IWD4 279 aaPredicted RBP10.46□□□□□ -0.73
USP39-215ENST00000481409 CCDC105Q8IYK2 499 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 GPR161Q8N6U8 529 aaKnown RBP10.46□□□□□ -0.73
USP39-215ENST00000481409 HJURPQ8NCD3 748 aaPredicted RBP10.46□□□□□ -0.73
USP39-215ENST00000481409 SMRP1Q8NCR6 262 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 ACTL9Q8TC94 416 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 ADAMTS19Q8TE59 1207 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 SH3RF2Q8TEC5 729 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.46□□□□□ -0.73
USP39-215ENST00000481409 SMARCD2Q92925 531 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 USP13Q92995 863 aaPredicted RBP10.46□□□□□ -0.73
USP39-215ENST00000481409 HDAC11Q96DB2 347 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 MSLNLQ96KJ4 702 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 RPRD1AQ96P16 312 aaPredicted RBP10.46□□□□□ -0.73
USP39-215ENST00000481409 OLFM3Q96PB7 478 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 DCBLD2Q96PD2 775 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 SLC22A12Q96S37 553 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 VAT1Q99536 393 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 GKN1Q9NS71 199 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 HAUS2Q9NVX0 235 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 THG1LQ9NWX6 298 aaKnown RBP10.46□□□□□ -0.73
USP39-215ENST00000481409 CLDND1Q9NY35 253 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 CLEC1BQ9P126 229 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 CFAP97Q9P2B7 532 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 VANGL2Q9ULK5 521 aa10.46□□□□□ -0.73
USP39-215ENST00000481409 C2orf16Q68DN1 1984 aa10.46□□□□□ -0.74
USP39-215ENST00000481409 MYO7AQ13402 2215 aa10.46□□□□□ -0.74
USP39-215ENST00000481409 CHD9Q3L8U1 2897 aa10.46□□□□□ -0.74
USP39-215ENST00000481409 TCRBV7S2A1N4TA0A589 114 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 ARHGAP42A6NI28 874 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 SMAPO00193 183 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 STK10O94804 968 aaKnown RBP10.45□□□□□ -0.74
USP39-215ENST00000481409 RBP3P10745 1247 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 GJA1P17302 382 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 CEBPBP17676 345 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 IGFBP4P22692 258 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 ACTN2P35609 894 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 EIF3EP60228 445 aaKnown RBP10.45□□□□□ -0.74
USP39-215ENST00000481409 DYNLT1P63172 113 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 NTHL1P78549 312 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 DR1Q01658 176 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 C2orf54Q08AI8 447 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 GALNT2Q10471 571 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 SLC12A1Q13621 1099 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 ADGRE1Q14246 886 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 ARTNQ5T4W7 220 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 C6orf118Q5T5N4 469 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 AFMIDQ63HM1 303 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 RAP1GAP2Q684P5 730 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 RNF43Q68DV7 783 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 MTSS1LQ765P7 747 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 NPAS3Q8IXF0 933 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 ZDHHC14Q8IZN3 488 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 LGI2Q8N0V4 545 aa10.45□□□□□ -0.74
USP39-215ENST00000481409 C12orf76Q8N812 135 aaPredicted RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 163 ms