RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 RHOBTB1O94844 696 aa14.68□□□□□ -0.06
VAMP4-203ENST00000474047 GJB6O95452 261 aa14.68□□□□□ -0.06
VAMP4-203ENST00000474047 EPHX1P07099 455 aa14.68□□□□□ -0.06
VAMP4-203ENST00000474047 SKILP12757 684 aa14.68□□□□□ -0.06
VAMP4-203ENST00000474047 IL12RB1P42701 662 aa14.68□□□□□ -0.06
VAMP4-203ENST00000474047 OXCT1P55809 520 aa14.68□□□□□ -0.06
VAMP4-203ENST00000474047 LMAN2Q12907 356 aa14.68□□□□□ -0.06
VAMP4-203ENST00000474047 ACBD5Q5T8D3 534 aaPredicted RBP14.68□□□□□ -0.06
VAMP4-203ENST00000474047 RNF219Q5W0B1 726 aaPredicted RBP14.68□□□□□ -0.06
VAMP4-203ENST00000474047 TMEM215Q68D42 235 aa14.68□□□□□ -0.06
VAMP4-203ENST00000474047 KIAA1211LQ6NV74 962 aa14.68□□□□□ -0.06
VAMP4-203ENST00000474047 DCUN1D2Q6PH85 259 aa14.68□□□□□ -0.06
VAMP4-203ENST00000474047 ADIPOR2Q86V24 386 aa14.68□□□□□ -0.06
VAMP4-203ENST00000474047 KBTBD6Q86V97 674 aa14.68□□□□□ -0.06
VAMP4-203ENST00000474047 VPS36Q86VN1 386 aa14.68□□□□□ -0.06
VAMP4-203ENST00000474047 CCAR2Q8N163 923 aaKnown RBP14.68□□□□□ -0.06
VAMP4-203ENST00000474047 DCLK2Q8N568 766 aa14.68□□□□□ -0.06
VAMP4-203ENST00000474047 FAM160A2Q8N612 972 aaPredicted RBP14.68□□□□□ -0.06
VAMP4-203ENST00000474047 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.68□□□□□ -0.06
VAMP4-203ENST00000474047 JOSD2Q8TAC2 188 aa14.68□□□□□ -0.06
VAMP4-203ENST00000474047 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.68□□□□□ -0.06
VAMP4-203ENST00000474047 TTYH3Q9C0H2 523 aa14.68□□□□□ -0.06
VAMP4-203ENST00000474047 ARHGEF38Q9NXL2 777 aa14.68□□□□□ -0.06
VAMP4-203ENST00000474047 CALCOCO1Q9P1Z2 691 aa14.68□□□□□ -0.06
VAMP4-203ENST00000474047 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.68□□□□□ -0.06
VAMP4-203ENST00000474047 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.67□□□□□ -0.06
VAMP4-203ENST00000474047 A0A1B0GVM2 712 aa14.67□□□□□ -0.06
VAMP4-203ENST00000474047 A0A1W2PQF6 199 aa14.67□□□□□ -0.06
VAMP4-203ENST00000474047 A0A1W2PQJ5 194 aa14.67□□□□□ -0.06
VAMP4-203ENST00000474047 TCAF2A6NFQ2 919 aa14.67□□□□□ -0.06
VAMP4-203ENST00000474047 SIGLEC16A6NMB1 481 aa14.67□□□□□ -0.06
VAMP4-203ENST00000474047 DCLK1O15075 740 aa14.67□□□□□ -0.06
VAMP4-203ENST00000474047 DLDP09622 509 aaKnown RBP14.67□□□□□ -0.06
VAMP4-203ENST00000474047 GABRG2P18507 467 aa14.67□□□□□ -0.06
VAMP4-203ENST00000474047 GPD1P21695 349 aa14.67□□□□□ -0.06
VAMP4-203ENST00000474047 GGCXP38435 758 aa14.67□□□□□ -0.06
VAMP4-203ENST00000474047 ATXN1P54253 815 aaKnown RBP14.67□□□□□ -0.06
VAMP4-203ENST00000474047 ZBED6P86452 979 aa14.67□□□□□ -0.06
VAMP4-203ENST00000474047 PTP4A2Q12974 167 aa14.67□□□□□ -0.06
VAMP4-203ENST00000474047 ZNF177Q13360 481 aaPredicted RBP14.67□□□□□ -0.06
VAMP4-203ENST00000474047 C15orf59Q2T9L4 293 aaPredicted RBP14.67□□□□□ -0.06
VAMP4-203ENST00000474047 OTUD1Q5VV17 481 aaPredicted RBP14.67□□□□□ -0.06
VAMP4-203ENST00000474047 TRNP1Q6NT89 227 aa14.67□□□□□ -0.06
VAMP4-203ENST00000474047 KIAA1324Q6UXG2 1013 aaKnown RBP14.67□□□□□ -0.06
VAMP4-203ENST00000474047 MON1BQ7L1V2 547 aa14.67□□□□□ -0.06
VAMP4-203ENST00000474047 ZNF571Q7Z3V5 609 aaPredicted RBP14.67□□□□□ -0.06
VAMP4-203ENST00000474047 KIAA0907Q7Z7F0 614 aaPredicted RBP14.67□□□□□ -0.06
VAMP4-203ENST00000474047 CIR1Q86X95 450 aaPredicted RBP14.67□□□□□ -0.06
VAMP4-203ENST00000474047 FAM131BQ86XD5 332 aa14.67□□□□□ -0.06
VAMP4-203ENST00000474047 MCOLN2Q8IZK6 566 aa14.67□□□□□ -0.06
VAMP4-203ENST00000474047 RLN3Q8WXF3 142 aa14.67□□□□□ -0.06
VAMP4-203ENST00000474047 CAPN11Q9UMQ6 739 aa14.67□□□□□ -0.06
VAMP4-203ENST00000474047 BZW2Q9Y6E2 419 aaKnown RBP14.67□□□□□ -0.06
VAMP4-203ENST00000474047 PTPRZ1P23471 2315 aaPredicted RBP14.66□□□□□ -0.06
VAMP4-203ENST00000474047 C2CD4BA6NLJ0 364 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 SRGAP2O75044 1071 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 ASLP04424 464 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 RETP07949 1114 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 RFC1P35251 1148 aaPredicted RBP14.66□□□□□ -0.06
VAMP4-203ENST00000474047 PBX1P40424 430 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 CSKP41240 450 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 PRKCIP41743 596 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 GSCP56915 257 aaPredicted RBP14.66□□□□□ -0.06
VAMP4-203ENST00000474047 FUT11Q495W5 492 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 CCDC14Q49A88 953 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 FSCBQ5H9T9 825 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 RNF43Q68DV7 783 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 WDR59Q6PJI9 974 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 GPR161Q8N6U8 529 aaKnown RBP14.66□□□□□ -0.06
VAMP4-203ENST00000474047 IGSF8Q969P0 613 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 VCPIP1Q96JH7 1222 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 ADAM33Q9BZ11 813 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 TAS2R14Q9NYV8 317 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 SUN2Q9UH99 717 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 ZNF217O75362 1048 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 CLDN11O75508 207 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 FTLP02792 175 aaPredicted RBP14.66□□□□□ -0.06
VAMP4-203ENST00000474047 TPM1P09493 284 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 NDUFV2P19404 249 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 PRKCHP24723 683 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 NNMTP40261 264 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 PTPN9P43378 593 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 SLC12A1Q13621 1099 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 PITRM1Q5JRX3 1037 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 C14orf80Q86SX3 495 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 KIAA2013Q8IYS2 634 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 FAM172AQ8WUF8 416 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 SYN2Q92777 582 aaPredicted RBP14.66□□□□□ -0.06
VAMP4-203ENST00000474047 C1orf74Q96LT6 269 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 MCEEQ96PE7 176 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 HAPLN3Q96S86 360 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 PRDM16Q9HAZ2 1276 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 PARVAQ9NVD7 372 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 USP18Q9UMW8 372 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 SNX10Q9Y5X0 201 aa14.66□□□□□ -0.06
VAMP4-203ENST00000474047 RIF1Q5UIP0 2472 aaKnown RBP14.65□□□□□ -0.06
VAMP4-203ENST00000474047 ACADMP11310 421 aa14.65□□□□□ -0.06
VAMP4-203ENST00000474047 GZMAP12544 262 aa14.65□□□□□ -0.06
VAMP4-203ENST00000474047 HLA-EP13747 358 aa14.65□□□□□ -0.06
VAMP4-203ENST00000474047 RRM1P23921 792 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms