RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 CAPN9O14815 690 aa19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 TRUB2O95900 331 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 CSKP41240 450 aa19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 RPS14P62263 151 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 FAM193AP78312 1265 aa19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 BNC1Q01954 994 aa19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 EXOC3L4Q17RC7 722 aa19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 DCAF6Q58WW2 860 aa19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 ZC3H12AQ5D1E8 599 aaKnown RBP19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 CREBRFQ8IUR6 639 aa19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 CARNMT1Q8N4J0 409 aa19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 MLKLQ8NB16 471 aa19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 MRGPRX3Q96LB0 322 aa19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 TMEM121BQ9BXQ6 578 aaPredicted RBP19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 MIR1-1HGQ9H1L0 117 aa19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 PCED1AQ9H1Q7 454 aa19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 MTG2Q9H4K7 406 aa19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 THAP9Q9H5L6 903 aa19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 C6orf106Q9H6K1 298 aaPredicted RBP19.47■□□□□ 0.71
CCDC88B-206ENST00000473405 TYW5A2RUC4 315 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-206ENST00000473405 LUC7L3O95232 432 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-206ENST00000473405 USP8P40818 1118 aa19.46■□□□□ 0.71
CCDC88B-206ENST00000473405 SIM1P81133 766 aaPredicted RBP19.46■□□□□ 0.71
CCDC88B-206ENST00000473405 ZBTB16Q05516 673 aa19.46■□□□□ 0.71
CCDC88B-206ENST00000473405 SLC14A1Q13336 389 aa19.46■□□□□ 0.71
CCDC88B-206ENST00000473405 CDH18Q13634 790 aa19.46■□□□□ 0.71
CCDC88B-206ENST00000473405 PITRM1Q5JRX3 1037 aa19.46■□□□□ 0.71
CCDC88B-206ENST00000473405 RAP1GAP2Q684P5 730 aa19.46■□□□□ 0.71
CCDC88B-206ENST00000473405 PASD1Q8IV76 773 aa19.46■□□□□ 0.71
CCDC88B-206ENST00000473405 BTN2A3PQ96KV6 586 aa19.46■□□□□ 0.71
CCDC88B-206ENST00000473405 ZDHHC5Q9C0B5 715 aa19.46■□□□□ 0.71
CCDC88B-206ENST00000473405 RSPH9Q9H1X1 276 aaPredicted RBP19.46■□□□□ 0.71
CCDC88B-206ENST00000473405 EIF2B4Q9UI10 523 aaKnown RBP19.46■□□□□ 0.71
CCDC88B-206ENST00000473405 PCDHGC3Q9UN70 934 aa19.46■□□□□ 0.71
CCDC88B-206ENST00000473405 BCAT2O15382 392 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-206ENST00000473405 APOEP02649 317 aa19.45■□□□□ 0.7
CCDC88B-206ENST00000473405 TACR2P21452 398 aa19.45■□□□□ 0.7
CCDC88B-206ENST00000473405 ARID5BQ14865 1188 aa19.45■□□□□ 0.7
CCDC88B-206ENST00000473405 HNRNPA1L2Q32P51 320 aaKnown RBP19.45■□□□□ 0.7
CCDC88B-206ENST00000473405 DPCR1Q3MIW9 517 aa19.45■□□□□ 0.7
CCDC88B-206ENST00000473405 CHSY1Q86X52 802 aa19.45■□□□□ 0.7
CCDC88B-206ENST00000473405 LGI2Q8N0V4 545 aa19.45■□□□□ 0.7
CCDC88B-206ENST00000473405 CAMK1GQ96NX5 476 aa19.45■□□□□ 0.7
CCDC88B-206ENST00000473405 SLC2A13Q96QE2 648 aa19.45■□□□□ 0.7
CCDC88B-206ENST00000473405 PRMT1Q99873 361 aaKnown RBP19.45■□□□□ 0.7
CCDC88B-206ENST00000473405 SCNM1Q9BWG6 230 aa19.45■□□□□ 0.7
CCDC88B-206ENST00000473405 ADAM33Q9BZ11 813 aa19.45■□□□□ 0.7
CCDC88B-206ENST00000473405 CLSTN2Q9H4D0 955 aa19.45■□□□□ 0.7
CCDC88B-206ENST00000473405 ZBTB32Q9Y2Y4 487 aaPredicted RBP19.45■□□□□ 0.7
CCDC88B-206ENST00000473405 CELSR3Q9NYQ7 3312 aa19.45■□□□□ 0.7
CCDC88B-206ENST00000473405 C1QTNF9BB2RNN3 333 aa19.44■□□□□ 0.7
CCDC88B-206ENST00000473405 SIN3BO75182 1162 aa19.44■□□□□ 0.7
CCDC88B-206ENST00000473405 ASLP04424 464 aa19.44■□□□□ 0.7
CCDC88B-206ENST00000473405 C1QTNF9P0C862 333 aa19.44■□□□□ 0.7
CCDC88B-206ENST00000473405 PNMA6AP0CW24 399 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-206ENST00000473405 CTSOP43234 321 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-206ENST00000473405 MTIF2P46199 727 aaKnown RBP19.44■□□□□ 0.7
CCDC88B-206ENST00000473405 ZNF776Q68DI1 518 aaPredicted RBP19.44■□□□□ 0.7
CCDC88B-206ENST00000473405 DPY19L2P1Q6NXN4 242 aa19.44■□□□□ 0.7
CCDC88B-206ENST00000473405 OLFML1Q6UWY5 402 aa19.44■□□□□ 0.7
CCDC88B-206ENST00000473405 UNQ6494/PRO21346Q6UXR6 183 aa19.44■□□□□ 0.7
CCDC88B-206ENST00000473405 KDM1BQ8NB78 822 aa19.44■□□□□ 0.7
CCDC88B-206ENST00000473405 PPP1R13BQ96KQ4 1090 aa19.44■□□□□ 0.7
CCDC88B-206ENST00000473405 FAM204AQ9H8W3 233 aa19.44■□□□□ 0.7
CCDC88B-206ENST00000473405 IL21RQ9HBE5 538 aa19.44■□□□□ 0.7
CCDC88B-206ENST00000473405 CHMP5Q9NZZ3 219 aa19.44■□□□□ 0.7
CCDC88B-206ENST00000473405 SUN2Q9UH99 717 aa19.44■□□□□ 0.7
CCDC88B-206ENST00000473405 CABIN1Q9Y6J0 2220 aa19.44■□□□□ 0.7
CCDC88B-206ENST00000473405 KCNU1A8MYU2 1149 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 SH3BP5O60239 455 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 SEMA4FO95754 770 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 DNTTP04053 509 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 PROS1P07225 676 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 GLI1P08151 1106 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 MAN2A1Q16706 1144 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 TTC31Q49AM3 519 aaPredicted RBP19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 MIIPQ5JXC2 388 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 SMYD5Q6GMV2 418 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 FAM183BPQ6ZVS7 135 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 SLC47A2Q86VL8 602 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 NAXDQ8IW45 347 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 DEFB106AQ8N104 65 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 C1orf131Q8NDD1 294 aaKnown RBP19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 SNX19Q92543 992 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 BTBD1Q9H0C5 482 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 ASNSD1Q9NWL6 643 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 SERGEFQ9UGK8 458 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 DNAJC12Q9UKB3 198 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 ERVW-1Q9UQF0 538 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 ITIH6Q6UXX5 1313 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 FAM208BQ5VWN6 2430 aa19.43■□□□□ 0.7
CCDC88B-206ENST00000473405 TTC34A8MYJ7 566 aa19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 H0Y626 953 aa19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 FOXN3O00409 490 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 HYAL3O43820 417 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 HSF2BPO75031 334 aa19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 GRAP2O75791 330 aa19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 ERBB2P04626 1255 aa19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 CLCN1P35523 988 aa19.42■□□□□ 0.7
CCDC88B-206ENST00000473405 ST8SIA6P61647 398 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms