RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	SYCE3	A1L190	88 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	MEI4	A8MW99	385 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	KHNYN	O15037	678 aa	Known RBP	11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	LUC7L3	O95232	432 aa	Known RBP	11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	DES	P17661	470 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	CD70	P32970	193 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	MATK	P42679	507 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	NSF	P46459	744 aa	Known RBP	11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	NUMB	P49757	651 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	PITX1	P78337	314 aa	Predicted RBP	11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	CDR2	Q01850	454 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	LMAN2	Q12907	356 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	FUT11	Q495W5	492 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	TTC39B	Q5VTQ0	682 aa	Predicted RBP	11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	LYSMD4	Q5XG99	296 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	LRRC31	Q6UY01	552 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	TRIM72	Q6ZMU5	477 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	PHLDB2	Q86SQ0	1253 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	ZNF366	Q8N895	744 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	GANC	Q8TET4	914 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	SLC20A1	Q8WUM9	679 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	SIPA1	Q96FS4	1042 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	SLC39A13	Q96H72	371 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	PRICKLE1	Q96MT3	831 aa	Predicted RBP	11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	SLC2A13	Q96QE2	648 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	PPP1R9B	Q96SB3	815 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	C11orf70	Q9BRQ4	267 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	NAA15	Q9BXJ9	866 aa	Known RBP	11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	METTL5	Q9NRN9	209 aa	Known RBP	11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	KIAA1522	Q9P206	1035 aa	Predicted RBP	11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	SUN2	Q9UH99	717 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	XPO7	Q9UIA9	1087 aa	Known RBP	11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	VANGL2	Q9ULK5	521 aa		11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	TP53BP1	Q12888	1972 aa	Predicted RBP	11.92	□□□□□ -0.5
CPNE1-222	ENST00000473373	SPTBN2	O15020	2390 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373		A0A1W2PQF6	199 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	ANKRD62	A6NC57	917 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	RNASEH1	O60930	286 aa	Known RBP	11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	F9	P00740	461 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	ASL	P04424	464 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	CFI	P05156	583 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	DLD	P09622	509 aa	Known RBP	11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	ZNF806	P0C7X5	589 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	ATP1A3	P13637	1013 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	PRKCH	P24723	683 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	GGCX	P38435	758 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	DPP6	P42658	865 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	ATXN3	P54252	364 aa	Predicted RBP	11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	NOMO3	P69849	1222 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	CDO1	Q16878	200 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	TTC31	Q49AM3	519 aa	Predicted RBP	11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	SYCP2L	Q5T4T6	812 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	RNF43	Q68DV7	783 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	MMS22L	Q6ZRQ5	1243 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	FAM124A	Q86V42	546 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	CIR1	Q86X95	450 aa	Predicted RBP	11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	XYLT1	Q86Y38	959 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	TMPRSS6	Q8IU80	811 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	FRMD1	Q8N878	549 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	SLC30A5	Q8TAD4	765 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	FIBIN	Q8TAL6	211 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	WFDC5	Q8TCV5	224 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	SNX19	Q92543	992 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	MRGPRX1	Q96LB2	322 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	BPIFA3	Q9BQP9	254 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	SELENOO	Q9BVL4	669 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	NUSAP1	Q9BXS6	441 aa	Known RBP	11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	TKTL2	Q9H0I9	626 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	SIK3	Q9Y2K2	1263 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	MUC22	E2RYF6	1773 aa	Predicted RBP	11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	ACACB	O00763	2458 aa		11.91	□□□□□ -0.5
CPNE1-222	ENST00000473373	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373		A0A1B0GVM2	712 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	BCLAF3	A2AJT9	711 aa	Known RBP	11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	TCAF2	A6NFQ2	919 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	EPHB6	O15197	1021 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	DNTT	P04053	509 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	PDGFRA	P16234	1089 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	FER	P16591	822 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	CDH5	P33151	784 aa	Predicted RBP	11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	CSK	P41240	450 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	OXCT1	P55809	520 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	JAM2	P57087	298 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	ATP11A	P98196	1134 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	ZNF177	Q13360	481 aa	Predicted RBP	11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	KLHL40	Q2TBA0	621 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	MAP7D1	Q3KQU3	841 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	ACCSL	Q4AC99	568 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	BRMS1L	Q5PSV4	323 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	TMEM215	Q68D42	235 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	CCAR2	Q8N163	923 aa	Known RBP	11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	ZNF397	Q8NF99	534 aa	Predicted RBP	11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	OLIG1	Q8TAK6	271 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	P2RY11	Q96G91	374 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	HSPA12B	Q96MM6	686 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	CFAP57	Q96MR6	1250 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	ERGIC2	Q96RQ1	377 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	TBCB	Q99426	244 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	EDEM2	Q9BV94	578 aa		11.9	□□□□□ -0.5
CPNE1-222	ENST00000473373	MUC3B	Q9H195	1237 aa		11.9	□□□□□ -0.5

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