RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 TPX2Q9ULW0 747 aaKnown RBP13.21□□□□□ -0.29
VPS13D-205ENST00000473099 SHOC2Q9UQ13 582 aa13.21□□□□□ -0.29
VPS13D-205ENST00000473099 C5orf60A6NFR6 353 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 GRXCR1A8MXD5 290 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 KCNN4O15554 427 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 ACSL4O60488 711 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 XYLBO75191 536 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 GCATO75600 419 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 OLFM2O95897 454 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 SPATA31D3P0C874 917 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 SRGAP2BP0DMP2 458 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 MYOGP15173 224 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 RHOQP17081 205 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 GABRR2P28476 465 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 BMP8BP34820 402 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 EPHA5P54756 1037 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 GALNT2Q10471 571 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 CASP8Q14790 479 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 PRKD1Q15139 912 aaPredicted RBP13.2□□□□□ -0.3
VPS13D-205ENST00000473099 TRIP13Q15645 432 aaPredicted RBP13.2□□□□□ -0.3
VPS13D-205ENST00000473099 MS4A13Q5J8X5 152 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 PIK3R6Q5UE93 754 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 IZUMO3Q5VZ72 239 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 ZDHHC24Q6UX98 284 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 SPATA31D4Q6ZUB0 917 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 TMC8Q8IU68 726 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 GSPT2Q8IYD1 628 aaKnown RBP13.2□□□□□ -0.3
VPS13D-205ENST00000473099 RTL3Q8N8U3 475 aaKnown RBP13.2□□□□□ -0.3
VPS13D-205ENST00000473099 FAM71DQ8N9W8 422 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 FBXO25Q8TCJ0 367 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 FUT8Q9BYC5 575 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 FRMD8Q9BZ67 464 aaPredicted RBP13.2□□□□□ -0.3
VPS13D-205ENST00000473099 PHACTR1Q9C0D0 580 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 ZYG11BQ9C0D3 744 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 IL21Q9HBE4 155 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 USP29Q9HBJ7 922 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 ZNF334Q9HCZ1 680 aaPredicted RBP13.2□□□□□ -0.3
VPS13D-205ENST00000473099 MAN1C1Q9NR34 630 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 ZDHHC7Q9NXF8 308 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 NEU3Q9UQ49 428 aa13.2□□□□□ -0.3
VPS13D-205ENST00000473099 DRGXA6NNA5 263 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 F5H5T6 163 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 MAP2K7O14733 419 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 CLASP2O75122 1294 aaKnown RBP13.19□□□□□ -0.3
VPS13D-205ENST00000473099 MBL2P11226 248 aaPredicted RBP13.19□□□□□ -0.3
VPS13D-205ENST00000473099 PTPN2P17706 415 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 RBL1P28749 1068 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 RPL22P35268 128 aaKnown RBP13.19□□□□□ -0.3
VPS13D-205ENST00000473099 HSPA9P38646 679 aaKnown RBP13.19□□□□□ -0.3
VPS13D-205ENST00000473099 VPS41P49754 854 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 NDST2P52849 883 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 ITGA8P53708 1063 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 PPIDQ08752 370 aaKnown RBP13.19□□□□□ -0.3
VPS13D-205ENST00000473099 GPS2Q13227 327 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 AUHQ13825 339 aaKnown RBP13.19□□□□□ -0.3
VPS13D-205ENST00000473099 CAMK1Q14012 370 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 TRADDQ15628 312 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 C5orf22Q49AR2 442 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 RABGAP1LQ5R372 815 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 FAM109BQ6ICB4 259 aaPredicted RBP13.19□□□□□ -0.3
VPS13D-205ENST00000473099 HIBCHQ6NVY1 386 aaPredicted RBP13.19□□□□□ -0.3
VPS13D-205ENST00000473099 RHBDF2Q6PJF5 856 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 PPP1R21Q6ZMI0 780 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 TMEM150AQ86TG1 271 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 CHSY1Q86X52 802 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 PPIL6Q8IXY8 311 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 SLC22A17Q8WUG5 538 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 HTR3CQ8WXA8 447 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 PPP2R3CQ969Q6 453 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 TSGA13Q96PP4 275 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 VAT1Q99536 393 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 PRMT1Q99873 361 aaKnown RBP13.19□□□□□ -0.3
VPS13D-205ENST00000473099 KLF16Q9BXK1 252 aaPredicted RBP13.19□□□□□ -0.3
VPS13D-205ENST00000473099 LRRC3Q9BY71 257 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 KLC2Q9H0B6 622 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 PRDM12Q9H4Q4 367 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 TMEM248Q9NWD8 314 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 ZNF446Q9NWS9 450 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 LSM7Q9UK45 103 aaKnown RBP13.19□□□□□ -0.3
VPS13D-205ENST00000473099 ZNF510Q9Y2H8 683 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 YBX2Q9Y2T7 364 aaKnown RBP13.19□□□□□ -0.3
VPS13D-205ENST00000473099 ANKRD36A6QL64 1941 aa13.19□□□□□ -0.3
VPS13D-205ENST00000473099 TRAV19A0A0A6YYK7 116 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 OPHN1O60890 802 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 PPFIA2O75334 1257 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 STC2O76061 302 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 ARHGEF15O94989 841 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 HMBSP08397 361 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 FAM153BP0C7A2 387 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 HDCP19113 662 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 TACR2P21452 398 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 FDFT1P37268 417 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 GARSP41250 739 aaKnown RBP13.18□□□□□ -0.3
VPS13D-205ENST00000473099 MAPKAPK2P49137 400 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 GDF10P55107 478 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 SLC7A9P82251 487 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 RBM10P98175 930 aaKnown RBP13.18□□□□□ -0.3
VPS13D-205ENST00000473099 AP1B1Q10567 949 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 FAM153CQ494X1 144 aa13.18□□□□□ -0.3
VPS13D-205ENST00000473099 ARHGAP15Q53QZ3 475 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms