RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	TMEM232	C9JQI7	657 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	STX16-NPEPL1	H3BU86	382 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	GRM8	O00222	908 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	STX16	O14662	325 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	CNTN5	O94779	1100 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	POLB	P06746	335 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	CYP2A6	P11509	494 aa	Predicted RBP	4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	PEPD	P12955	493 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	ACP5	P13686	325 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	TNNT1	P13805	278 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	IDUA	P35475	653 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	PTH2R	P49190	550 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	VPS41	P49754	854 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	CDK18	Q07002	472 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	SLC12A1	Q13621	1099 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	THOC5	Q13769	683 aa	Known RBP	4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	GPR162	Q16538	588 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	PFKFB3	Q16875	520 aa	Predicted RBP	4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	CBWD5	Q5RIA9	395 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	STRIP1	Q5VSL9	837 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	ANO7	Q6IWH7	933 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	DENND1B	Q6P3S1	775 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	ZNF813	Q6ZN06	617 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	RFX6	Q8HWS3	928 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	BOLL	Q8N9W6	283 aa	Known RBP	4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	ATP2A3	Q93084	1043 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	ZNF764	Q96H86	408 aa	Predicted RBP	4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	GPR78	Q96P69	363 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	PPP1R10	Q96QC0	940 aa	Known RBP	4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	NAP1L4	Q99733	375 aa	Known RBP	4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	ERVK-5	Q9HDB9	667 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	ZNHIT2	Q9UHR6	403 aa		4.27	□□□□□ -1.73
PTCD3-209	ENST00000472044	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	EMSY	Q7Z589	1322 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	CCDC196	A0A1B0GTZ2	297 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	LINC01548	A6NM66	108 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	PRRT4	C9JH25	899 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	SMIM22	K7EJ46	135 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	AGR2	O95994	175 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	CSF1	P09603	554 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	ALDOC	P09972	364 aa	Known RBP	4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	TGM2	P21980	687 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	CNTF	P26441	200 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	ADPRH	P54922	357 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	SHC2	P98077	582 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	TBX2	Q13207	712 aa	Predicted RBP	4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	TRPC3	Q13507	836 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	LRRC24	Q50LG9	513 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	WDR45B	Q5MNZ6	344 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	FBXO42	Q6P3S6	717 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	ZNF474	Q6S9Z5	364 aa	Predicted RBP	4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	KIAA1324	Q6UXG2	1013 aa	Known RBP	4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	PTF1A	Q7RTS3	328 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	TFAP2D	Q7Z6R9	452 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	PRIMA1	Q86XR5	153 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	PNLDC1	Q8NA58	520 aa	Known RBP	4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	C8orf58	Q8NAV2	365 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	NAXE	Q8NCW5	288 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	HASPIN	Q8TF76	798 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	NELL1	Q92832	810 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	PPM1M	Q96MI6	270 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	HERC2P3	Q9BVR0	1158 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	TRIM2	Q9C040	744 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	UBA5	Q9GZZ9	404 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	RIOX1	Q9H6W3	641 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	RMI1	Q9H9A7	625 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	CRYL1	Q9Y2S2	319 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	TMEM98	Q9Y2Y6	226 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	COX11	Q9Y6N1	276 aa		4.26	□□□□□ -1.73
PTCD3-209	ENST00000472044	NPIPB13	A6NJU9	1138 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	NPIPB5	A8MRT5	1133 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	NPIPB4	C9JG80	1138 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	RRH	O14718	337 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	LATS1	O95835	1130 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	TACR3	P29371	465 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	SOX2	P48431	317 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	PROK1	P58294	105 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	SEMA3A	Q14563	771 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	KPNB1	Q14974	876 aa	Known RBP	4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	DLGAP5	Q15398	846 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	KRTAP15-1	Q3LI76	137 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	AWAT1	Q58HT5	328 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	CC2D1B	Q5T0F9	858 aa	Known RBP	4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	JAKMIP3	Q5VZ66	844 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	ATG16L1	Q676U5	607 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	UEVLD	Q8IX04	471 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	C16orf71	Q8IYS4	520 aa	Predicted RBP	4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	PAQR4	Q8N4S7	273 aa	Predicted RBP	4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	PAF1	Q8N7H5	531 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	LINS1	Q8NG48	757 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	OR52N4	Q8NGI2	321 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	BCAS4	Q8TDM0	211 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	MASTL	Q96GX5	879 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	MAF1	Q9H063	256 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	TMPRSS5	Q9H3S3	457 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	R3HDML	Q9H3Y0	253 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	TXNRD2	Q9NNW7	524 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	ARL8B	Q9NVJ2	186 aa		4.25	□□□□□ -1.73
PTCD3-209	ENST00000472044	CD207	Q9UJ71	328 aa		4.25	□□□□□ -1.73

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