RNA–Protein interactions for RNA: ENST00000471245.1

CKS1B-204, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best)

Gene CKS1B, Length 1,166 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-204ENST00000471245 TMEM200CA6NKL6 621 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 SLC16A3O15427 465 aaKnown RBP6.33□□□□□ -1.4
CKS1B-204ENST00000471245 PROM1O43490 865 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 FAM20BO75063 409 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 WDR47O94967 919 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 NDUFA10O95299 355 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 LAG3P18627 525 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 ZFP36P26651 326 aaKnown RBP6.33□□□□□ -1.4
CKS1B-204ENST00000471245 NXPH1P58417 271 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 ST3GAL2Q16842 350 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 SLC9A4Q6AI14 798 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 ZNF585AQ6P3V2 769 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 CLEC9AQ6UXN8 241 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 ANKS1BQ7Z6G8 1248 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 RAB11FIP4Q86YS3 637 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 ZNF276Q8N554 614 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 C8orf49Q96NF6 230 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 SEC62Q99442 399 aaKnown RBP6.33□□□□□ -1.4
CKS1B-204ENST00000471245 PAAF1Q9BRP4 392 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 ZHX3Q9H4I2 956 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 GLOD4Q9HC38 313 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 PARPBPQ9NWS1 579 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 GGA3Q9NZ52 723 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 CEP72Q9P209 647 aa6.33□□□□□ -1.4
CKS1B-204ENST00000471245 NUP98P52948 1817 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 A8MVJ9 347 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 KIAA0355O15063 1070 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 MUSKO15146 869 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 RNMTO43148 476 aaKnown RBP6.32□□□□□ -1.4
CKS1B-204ENST00000471245 HOXC11O43248 304 aaPredicted RBP6.32□□□□□ -1.4
CKS1B-204ENST00000471245 LPXNO60711 386 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 PPP6R2O75170 966 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 RPP40O75818 363 aaKnown RBP6.32□□□□□ -1.4
CKS1B-204ENST00000471245 LARGE1O95461 756 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 TFRCP02786 760 aaKnown RBP6.32□□□□□ -1.4
CKS1B-204ENST00000471245 CNTFP26441 200 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 EPS15P42566 896 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 SEC24CP53992 1094 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 VAMP2P63027 116 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 SP2Q02086 613 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 SIM2Q14190 667 aaPredicted RBP6.32□□□□□ -1.4
CKS1B-204ENST00000471245 SMAD1Q15797 465 aaKnown RBP6.32□□□□□ -1.4
CKS1B-204ENST00000471245 LY6KQ17RY6 165 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 RETSATQ6NUM9 610 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 MSANTD2Q6P1R3 559 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 PCGF5Q86SE9 256 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 LNX2Q8N448 690 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 SSH3Q8TE77 659 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 SLC25A43Q8WUT9 341 aaPredicted RBP6.32□□□□□ -1.4
CKS1B-204ENST00000471245 GLG1Q92896 1179 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 SKA1Q96BD8 255 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 HAPLN3Q96S86 360 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 PI4KBQ9UBF8 816 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 ST6GALNAC2Q9UJ37 374 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 SH2B3Q9UQQ2 575 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 TSC22D4Q9Y3Q8 395 aa6.32□□□□□ -1.4
CKS1B-204ENST00000471245 A1L4Q6 167 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 CAMTA2O94983 1202 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 SPDEFO95238 335 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 STARD3NLO95772 234 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 LMNAP02545 664 aaKnown RBP6.31□□□□□ -1.4
CKS1B-204ENST00000471245 POLBP06746 335 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 ADRB1P08588 477 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 JUPP14923 745 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 ZNF20P17024 532 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 NR4A1P22736 598 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 SERPINA4P29622 427 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 DGKQP52824 942 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 GEMIN4P57678 1058 aaKnown RBP6.31□□□□□ -1.4
CKS1B-204ENST00000471245 EIF4A1P60842 406 aaKnown RBP6.31□□□□□ -1.4
CKS1B-204ENST00000471245 UBE3AQ05086 875 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 LMOD3Q0VAK6 560 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 MTAPQ13126 283 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 ZNF618Q5T7W0 954 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 MAP3K21Q5TCX8 1036 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 CLEC4GQ6UXB4 293 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 PIK3AP1Q6ZUJ8 805 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 USP50Q70EL3 339 aaPredicted RBP6.31□□□□□ -1.4
CKS1B-204ENST00000471245 PRRT2Q7Z6L0 340 aaPredicted RBP6.31□□□□□ -1.4
CKS1B-204ENST00000471245 LRRC71Q8N4P6 559 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 TMEM57Q8N5G2 664 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 ESX1Q8N693 406 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 METTL25Q8N6Q8 603 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 SUPT20HQ8NEM7 779 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 IL17DQ8TAD2 202 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 MYCBPAPQ8TBZ2 947 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 OVCA2Q8WZ82 227 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 LPIN2Q92539 896 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 C3orf49Q96BT1 292 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 ALG8Q9BVK2 526 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 BRD8Q9H0E9 1235 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 UBN1Q9NPG3 1134 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 VPS45Q9NRW7 570 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 TMLHEQ9NVH6 421 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 TBCCD1Q9NVR7 557 aa6.31□□□□□ -1.4
CKS1B-204ENST00000471245 NKX1-2Q9UD57 310 aaPredicted RBP6.31□□□□□ -1.4
CKS1B-204ENST00000471245 TISP43B9A030 160 aa6.3□□□□□ -1.4
CKS1B-204ENST00000471245 PSMD9O00233 223 aa6.3□□□□□ -1.4
CKS1B-204ENST00000471245 CTIFO43310 598 aaKnown RBP6.3□□□□□ -1.4
CKS1B-204ENST00000471245 CELF2O95319 508 aaKnown RBP6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms