RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 PASD1Q8IV76 773 aa16.88■□□□□ 0.29
COL9A3-208ENST00000469802 FAM114A1Q8IWE2 563 aa16.88■□□□□ 0.29
COL9A3-208ENST00000469802 FAM71AQ8IYT1 594 aa16.88■□□□□ 0.29
COL9A3-208ENST00000469802 CFAP52Q8N1V2 620 aa16.88■□□□□ 0.29
COL9A3-208ENST00000469802 KDM1BQ8NB78 822 aa16.88■□□□□ 0.29
COL9A3-208ENST00000469802 C1orf131Q8NDD1 294 aaKnown RBP16.88■□□□□ 0.29
COL9A3-208ENST00000469802 OR2I1PQ8NGU4 316 aa16.88■□□□□ 0.29
COL9A3-208ENST00000469802 PPP1R13BQ96KQ4 1090 aa16.88■□□□□ 0.29
COL9A3-208ENST00000469802 PRMT1Q99873 361 aaKnown RBP16.88■□□□□ 0.29
COL9A3-208ENST00000469802 NDST4Q9H3R1 872 aa16.88■□□□□ 0.29
COL9A3-208ENST00000469802 DNAJC12Q9UKB3 198 aa16.88■□□□□ 0.29
COL9A3-208ENST00000469802 ITIH6Q6UXX5 1313 aa16.88■□□□□ 0.29
COL9A3-208ENST00000469802 A0A1B0GTW7 788 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 FOXN3O00409 490 aaPredicted RBP16.87■□□□□ 0.29
COL9A3-208ENST00000469802 OPHN1O60890 802 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 HSF2BPO75031 334 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 PNMA6AP0CW24 399 aaPredicted RBP16.87■□□□□ 0.29
COL9A3-208ENST00000469802 CD59P13987 128 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 TACR2P21452 398 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 CLCN1P35523 988 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 PTK2Q05397 1052 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 GRIK2Q13002 908 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 TPD52L1Q16890 204 aaPredicted RBP16.87■□□□□ 0.29
COL9A3-208ENST00000469802 HNRNPA1L2Q32P51 320 aaKnown RBP16.87■□□□□ 0.29
COL9A3-208ENST00000469802 PTPN20Q4JDL3 420 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 VWA3BQ502W6 1294 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 PITRM1Q5JRX3 1037 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 RAP1GAP2Q684P5 730 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 MMS22LQ6ZRQ5 1243 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 FAM183BPQ6ZVS7 135 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 SLC47A2Q86VL8 602 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 CHSY1Q86X52 802 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 LGI2Q8N0V4 545 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 DEFB106AQ8N104 65 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 CARNMT1Q8N4J0 409 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 HDDC3Q8N4P3 179 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 ZCCHC9Q8N567 271 aaKnown RBP16.87■□□□□ 0.29
COL9A3-208ENST00000469802 TUBGCP2Q9BSJ2 902 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 NUP62CLQ9H1M0 184 aa16.87■□□□□ 0.29
COL9A3-208ENST00000469802 RSPH9Q9H1X1 276 aaPredicted RBP16.87■□□□□ 0.29
COL9A3-208ENST00000469802 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.87■□□□□ 0.29
COL9A3-208ENST00000469802 ERBB2P04626 1255 aa16.86■□□□□ 0.29
COL9A3-208ENST00000469802 ACSL1P33121 698 aa16.86■□□□□ 0.29
COL9A3-208ENST00000469802 SLC14A1Q13336 389 aa16.86■□□□□ 0.29
COL9A3-208ENST00000469802 EFHC1Q5JVL4 640 aa16.86■□□□□ 0.29
COL9A3-208ENST00000469802 OTUD1Q5VV17 481 aaPredicted RBP16.86■□□□□ 0.29
COL9A3-208ENST00000469802 ZNF776Q68DI1 518 aaPredicted RBP16.86■□□□□ 0.29
COL9A3-208ENST00000469802 SLC26A9Q7LBE3 791 aa16.86■□□□□ 0.29
COL9A3-208ENST00000469802 FAM124AQ86V42 546 aa16.86■□□□□ 0.29
COL9A3-208ENST00000469802 NOX5Q96PH1 765 aa16.86■□□□□ 0.29
COL9A3-208ENST00000469802 ZDHHC5Q9C0B5 715 aa16.86■□□□□ 0.29
COL9A3-208ENST00000469802 MTG2Q9H4K7 406 aa16.86■□□□□ 0.29
COL9A3-208ENST00000469802 SLC32A1Q9H598 525 aa16.86■□□□□ 0.29
COL9A3-208ENST00000469802 FAM204AQ9H8W3 233 aa16.86■□□□□ 0.29
COL9A3-208ENST00000469802 SUN2Q9UH99 717 aa16.86■□□□□ 0.29
COL9A3-208ENST00000469802 DACH1Q9UI36 760 aa16.86■□□□□ 0.29
COL9A3-208ENST00000469802 AKAP13Q12802 2813 aa16.85■□□□□ 0.29
COL9A3-208ENST00000469802 F5H5T6 163 aa16.85■□□□□ 0.29
COL9A3-208ENST00000469802 BCAT2O15382 392 aaPredicted RBP16.85■□□□□ 0.29
COL9A3-208ENST00000469802 SIN3BO75182 1162 aa16.85■□□□□ 0.29
COL9A3-208ENST00000469802 DAB1O75553 588 aa16.85■□□□□ 0.29
COL9A3-208ENST00000469802 SRPRAP08240 638 aaKnown RBP16.85■□□□□ 0.29
COL9A3-208ENST00000469802 SLC2A3P11169 496 aa16.85■□□□□ 0.29
COL9A3-208ENST00000469802 PRKCSHP14314 528 aaPredicted RBP16.85■□□□□ 0.29
COL9A3-208ENST00000469802 CDH5P33151 784 aaPredicted RBP16.85■□□□□ 0.29
COL9A3-208ENST00000469802 CDK17Q00537 523 aa16.85■□□□□ 0.29
COL9A3-208ENST00000469802 BNC1Q01954 994 aa16.85■□□□□ 0.29
COL9A3-208ENST00000469802 KCNMA1Q12791 1236 aa16.85■□□□□ 0.29
COL9A3-208ENST00000469802 TTC31Q49AM3 519 aaPredicted RBP16.85■□□□□ 0.29
COL9A3-208ENST00000469802 TTC39BQ5VTQ0 682 aaPredicted RBP16.85■□□□□ 0.29
COL9A3-208ENST00000469802 C11orf57Q6ZUT1 292 aaPredicted RBP16.85■□□□□ 0.29
COL9A3-208ENST00000469802 ATP6V0D2Q8N8Y2 350 aa16.85■□□□□ 0.29
COL9A3-208ENST00000469802 ZNF397Q8NF99 534 aaPredicted RBP16.85■□□□□ 0.29
COL9A3-208ENST00000469802 NAA15Q9BXJ9 866 aaKnown RBP16.85■□□□□ 0.29
COL9A3-208ENST00000469802 C6orf106Q9H6K1 298 aaPredicted RBP16.85■□□□□ 0.29
COL9A3-208ENST00000469802 DDIT4Q9NX09 232 aa16.85■□□□□ 0.29
COL9A3-208ENST00000469802 KIAA1522Q9P206 1035 aaPredicted RBP16.85■□□□□ 0.29
COL9A3-208ENST00000469802 EIF2B4Q9UI10 523 aaKnown RBP16.85■□□□□ 0.29
COL9A3-208ENST00000469802 ERVW-1Q9UQF0 538 aa16.85■□□□□ 0.29
COL9A3-208ENST00000469802 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.85■□□□□ 0.29
COL9A3-208ENST00000469802 SLCO1B1Q9Y6L6 691 aa16.85■□□□□ 0.29
COL9A3-208ENST00000469802 A0A1B0GVM2 712 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 TCAF2A6NFQ2 919 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 C10orf142B7Z368 130 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 H0Y626 953 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 GRAP2O75791 330 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 SEMA4FO95754 770 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 DNTTP04053 509 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 CCR1P32246 355 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 CTSOP43234 321 aaPredicted RBP16.84■□□□□ 0.29
COL9A3-208ENST00000469802 ST8SIA6P61647 398 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 FOXC1Q12948 553 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 ST3GAL2Q16842 350 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 HSP90AA4PQ58FG1 418 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 CT47A1Q5JQC4 288 aaPredicted RBP16.84■□□□□ 0.29
COL9A3-208ENST00000469802 USP30Q70CQ3 517 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 CCDC117Q8IWD4 279 aaPredicted RBP16.84■□□□□ 0.29
COL9A3-208ENST00000469802 APCDD1Q8J025 514 aa16.84■□□□□ 0.29
COL9A3-208ENST00000469802 CCAR2Q8N163 923 aaKnown RBP16.84■□□□□ 0.29
COL9A3-208ENST00000469802 ADAM33Q9BZ11 813 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms