RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 GRIA2P42262 883 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 CHN2P52757 468 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 ARHGAP8P85298 464 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 MSLNQ13421 630 aaPredicted RBP9.86□□□□□ -0.83
HDAC3-205ENST00000469550 GPM6BQ13491 265 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 ANKRD20A4Q4UJ75 823 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 SFT2D3Q587I9 215 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 TMEM31Q5JXX7 168 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 STXBP5Q5T5C0 1151 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 UGT2A3Q6UWM9 527 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 RSPH3Q86UC2 560 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 NUDCD3Q8IVD9 361 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 IGDCC3Q8IVU1 814 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 RBM12BQ8IXT5 1001 aaKnown RBP9.86□□□□□ -0.83
HDAC3-205ENST00000469550 FNIP1Q8TF40 1166 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 BSNDQ8WZ55 320 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 PABPC5Q96DU9 382 aaKnown RBP9.86□□□□□ -0.83
HDAC3-205ENST00000469550 KIFC3Q9BVG8 833 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 SMARCAD1Q9H4L7 1026 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 FAM96AQ9H5X1 160 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 NSUN3Q9H649 340 aaKnown RBP9.86□□□□□ -0.83
HDAC3-205ENST00000469550 C11orf16Q9NQ32 467 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 THAP1Q9NVV9 213 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 CHMP2BQ9UQN3 213 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 TMEM150BA6NC51 233 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 TTLL13PA6NNM8 815 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 APOC4-APOC2K7ER74 178 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 DENRO43583 198 aaKnown RBP9.86□□□□□ -0.83
HDAC3-205ENST00000469550 RFPL1O75677 317 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 USP1O94782 785 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 APOC2P02655 101 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 BPGMP07738 259 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 CCDC166P0CW27 439 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 KCNA5P22460 613 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 EIF4BP23588 611 aaKnown RBP9.86□□□□□ -0.83
HDAC3-205ENST00000469550 KDELR1P24390 212 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 CRHR1P34998 444 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 PDE1BQ01064 536 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 KRT76Q01546 638 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 SLC25A11Q02978 314 aaKnown RBP9.86□□□□□ -0.83
HDAC3-205ENST00000469550 MTMR1Q13613 665 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 KCNJ11Q14654 390 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 LPIN1Q14693 890 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 PDK3Q15120 406 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 CHI3L2Q15782 390 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 GRIK4Q16099 956 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 HADHQ16836 314 aaKnown RBP9.86□□□□□ -0.83
HDAC3-205ENST00000469550 SPOPLQ6IQ16 392 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 RNF111Q6ZNA4 994 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 UNC45BQ8IWX7 931 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 MARVELD2Q8N4S9 558 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 FIBCD1Q8N539 461 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 GSTCDQ8NEC7 633 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 MIPOL1Q8TD10 442 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 ACTRT2Q8TDY3 377 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 KHSRPQ92945 711 aaKnown RBP eCLIP9.86□□□□□ -0.83
HDAC3-205ENST00000469550 CLP1Q92989 425 aaKnown RBP9.86□□□□□ -0.83
HDAC3-205ENST00000469550 FAM122AQ96E09 287 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 SH2D3AQ9BRG2 576 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 OCEL1Q9H607 264 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 SUDS3Q9H7L9 328 aaPredicted RBP9.86□□□□□ -0.83
HDAC3-205ENST00000469550 CD320Q9NPF0 282 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 PLK2Q9NYY3 685 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 PKD2L1Q9P0L9 805 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 ARHGAP28Q9P2N2 729 aa9.86□□□□□ -0.83
HDAC3-205ENST00000469550 A0A0B4J269 797 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 RRN3P2A6NIE6 340 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 ZNF862O60290 1169 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 FAM189A1O60320 539 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 DKC1O60832 514 aaKnown RBP eCLIP9.85□□□□□ -0.83
HDAC3-205ENST00000469550 KRT38O76015 456 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 RPL5P46777 297 aaKnown RBP9.85□□□□□ -0.83
HDAC3-205ENST00000469550 ALDH18A1P54886 795 aaKnown RBP9.85□□□□□ -0.83
HDAC3-205ENST00000469550 YWHAGP61981 247 aaKnown RBP eCLIP9.85□□□□□ -0.83
HDAC3-205ENST00000469550 STX3Q13277 289 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 TUBB3Q13509 450 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 CCNIQ14094 377 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 MYBPC3Q14896 1274 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 MMEL1Q495T6 779 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 FBXO47Q5MNV8 452 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 RABGAP1LQ5R372 815 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 MARCH8Q5T0T0 291 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 ARMC3Q5W041 872 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 PTCRAQ6ISU1 281 aaPredicted RBP9.85□□□□□ -0.83
HDAC3-205ENST00000469550 TSHZ1Q6ZSZ6 1077 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 ANO5Q75V66 913 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 WDR75Q8IWA0 830 aaKnown RBP9.85□□□□□ -0.83
HDAC3-205ENST00000469550 CCDC33Q8N5R6 958 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 MCPH1Q8NEM0 835 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 PPP1R14BQ96C90 147 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 ZNF689Q96CS4 500 aaPredicted RBP9.85□□□□□ -0.83
HDAC3-205ENST00000469550 LRRC39Q96DD0 335 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 PRICKLE1Q96MT3 831 aaPredicted RBP9.85□□□□□ -0.83
HDAC3-205ENST00000469550 RILPQ96NA2 401 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 C11orf84Q9BUA3 381 aaPredicted RBP9.85□□□□□ -0.83
HDAC3-205ENST00000469550 PCDHGC3Q9UN70 934 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 TTLL3Q9Y4R7 772 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 MAD1L1Q9Y6D9 718 aa9.85□□□□□ -0.83
HDAC3-205ENST00000469550 MCF2LO15068 1137 aa9.84□□□□□ -0.83
HDAC3-205ENST00000469550 LDHAP00338 332 aaKnown RBP9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms