RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 PRPSAP2O60256 369 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 SRGAP2O75044 1071 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 LRCH4O75427 683 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 LUC7L3O95232 432 aaKnown RBP12.33□□□□□ -0.44
VPS13D-204ENST00000469054 HLA-FP30511 346 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 TNFRSF4P43489 277 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 CDH18Q13634 790 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 GSE1Q14687 1217 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 TCEAL1Q15170 157 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 EFHC2Q5JST6 749 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 ANKS1BQ7Z6G8 1248 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 CCDC117Q8IWD4 279 aaPredicted RBP12.33□□□□□ -0.44
VPS13D-204ENST00000469054 SFTPA1Q8IWL2 248 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 CCAR2Q8N163 923 aaKnown RBP12.33□□□□□ -0.44
VPS13D-204ENST00000469054 CARNMT1Q8N4J0 409 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 FIBINQ8TAL6 211 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 WFDC5Q8TCV5 224 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 RFFLQ8WZ73 363 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 MAGEB5Q9BZ81 275 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 CHRDQ9H2X0 955 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 OR12D3Q9UGF7 316 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 PCSK1NQ9UHG2 260 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 LCMT1Q9UIC8 334 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 USP18Q9UMW8 372 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 PRRT4C9JH25 899 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 H0Y626 953 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 RNF40O75150 1001 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 CLDN11O75508 207 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 MTA2O94776 668 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 PROSCO94903 275 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 L1CAMP32004 1257 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 CDH4P55283 916 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 KRT83P78385 493 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 MRPS21P82921 87 aaKnown RBP12.32□□□□□ -0.44
VPS13D-204ENST00000469054 GAS6Q14393 721 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 GEN1Q17RS7 908 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 BOLA3Q53S33 107 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 ALFQ53S48 1182 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 FSCBQ5H9T9 825 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 ARTNQ5T4W7 220 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 ERMARDQ5T6L9 678 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 DAB2IPQ5VWQ8 1189 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 Q6ZS52 159 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 CHST9Q7L1S5 443 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 KIAA0907Q7Z7F0 614 aaPredicted RBP12.32□□□□□ -0.44
VPS13D-204ENST00000469054 CIR1Q86X95 450 aaPredicted RBP12.32□□□□□ -0.44
VPS13D-204ENST00000469054 LRRC8AQ8IWT6 810 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.32□□□□□ -0.44
VPS13D-204ENST00000469054 ACRBPQ8NEB7 543 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 CCDC112Q8NEF3 446 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 KCNV2Q8TDN2 545 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 ANP32BQ92688 251 aaKnown RBP12.32□□□□□ -0.44
VPS13D-204ENST00000469054 LMLNQ96KR4 655 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 PEBP4Q96S96 227 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 IER2Q9BTL4 223 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 ABCB8Q9NUT2 735 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 MPP6Q9NZW5 540 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 KIAA1522Q9P206 1035 aaPredicted RBP12.32□□□□□ -0.44
VPS13D-204ENST00000469054 PPARGC1AQ9UBK2 798 aaKnown RBP12.32□□□□□ -0.44
VPS13D-204ENST00000469054 REXO2Q9Y3B8 237 aaKnown RBP12.32□□□□□ -0.44
VPS13D-204ENST00000469054 STARD13Q9Y3M8 1113 aa12.32□□□□□ -0.44
VPS13D-204ENST00000469054 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.31□□□□□ -0.44
VPS13D-204ENST00000469054 A0A0A6YYK5 440 aaPredicted RBP12.31□□□□□ -0.44
VPS13D-204ENST00000469054 ANTXRLA6NF34 631 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 FAM72CH0Y354 149 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 TIMM44O43615 452 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 ATG13O75143 517 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 CNTN5O94779 1100 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 LRIG2O94898 1065 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 PABPC1P11940 636 aaKnown RBP12.31□□□□□ -0.44
VPS13D-204ENST00000469054 IL1R2P27930 398 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 CD70P32970 193 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 TIE1P35590 1138 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 ARHGAP25P42331 645 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 KIR2DL1P43626 348 aaPredicted RBP12.31□□□□□ -0.44
VPS13D-204ENST00000469054 NOP2P46087 812 aaKnown RBP12.31□□□□□ -0.44
VPS13D-204ENST00000469054 IRAK1P51617 712 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 SEC13P55735 322 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 LMAN2Q12907 356 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 MTAPQ13126 283 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 ZNF177Q13360 481 aaPredicted RBP12.31□□□□□ -0.44
VPS13D-204ENST00000469054 FAM72AQ5TYM5 149 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 EMC10Q5UCC4 262 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 MANEALQ5VSG8 457 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 FAM72DQ6L9T8 149 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 MAMSTRQ6ZN01 415 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 CYP4V2Q6ZWL3 525 aaPredicted RBP12.31□□□□□ -0.44
VPS13D-204ENST00000469054 FAM72BQ86X60 149 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 PSTKQ8IV42 348 aaKnown RBP12.31□□□□□ -0.44
VPS13D-204ENST00000469054 AHI1Q8N157 1196 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 PYROXD2Q8N2H3 581 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 DTWD2Q8NBA8 298 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 RPLP0P6Q8NHW5 317 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 WFIKKN2Q8TEU8 576 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 USP33Q8TEY7 942 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 PHF12Q96QT6 1004 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 EPAS1Q99814 870 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 SNRNP25Q9BV90 132 aaKnown RBP12.31□□□□□ -0.44
VPS13D-204ENST00000469054 ZYG11BQ9C0D3 744 aa12.31□□□□□ -0.44
VPS13D-204ENST00000469054 GPATCH2LQ9NWQ4 482 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms