RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 WFDC5Q8TCV5 224 aa18.14■□□□□ 0.49
COL7A1-206ENST00000466591 DNASE2BQ8WZ79 361 aa18.14■□□□□ 0.49
COL7A1-206ENST00000466591 PPP1R13BQ96KQ4 1090 aa18.14■□□□□ 0.49
COL7A1-206ENST00000466591 OMDQ99983 421 aa18.14■□□□□ 0.49
COL7A1-206ENST00000466591 SCNM1Q9BWG6 230 aa18.14■□□□□ 0.49
COL7A1-206ENST00000466591 SLC4A5Q9BY07 1137 aa18.14■□□□□ 0.49
COL7A1-206ENST00000466591 GAREM1Q9H706 876 aa18.14■□□□□ 0.49
COL7A1-206ENST00000466591 ACP6Q9NPH0 428 aa18.14■□□□□ 0.49
COL7A1-206ENST00000466591 PRSS16Q9NQE7 514 aa18.14■□□□□ 0.49
COL7A1-206ENST00000466591 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.14■□□□□ 0.49
COL7A1-206ENST00000466591 DDIT4Q9NX09 232 aa18.14■□□□□ 0.49
COL7A1-206ENST00000466591 CHMP5Q9NZZ3 219 aa18.14■□□□□ 0.49
COL7A1-206ENST00000466591 CNTN6Q9UQ52 1028 aa18.14■□□□□ 0.49
COL7A1-206ENST00000466591 UPK3BL1B0FP48 263 aa18.13■□□□□ 0.49
COL7A1-206ENST00000466591 UPK3BL2E5RIL1 263 aa18.13■□□□□ 0.49
COL7A1-206ENST00000466591 PAPSS1O43252 624 aaPredicted RBP18.13■□□□□ 0.49
COL7A1-206ENST00000466591 SH3BP5O60239 455 aa18.13■□□□□ 0.49
COL7A1-206ENST00000466591 IGLV3-19P01714 112 aa18.13■□□□□ 0.49
COL7A1-206ENST00000466591 TACR2P21452 398 aa18.13■□□□□ 0.49
COL7A1-206ENST00000466591 CCR1P32246 355 aa18.13■□□□□ 0.49
COL7A1-206ENST00000466591 EFHC1Q5JVL4 640 aa18.13■□□□□ 0.49
COL7A1-206ENST00000466591 BEND5Q7L4P6 421 aa18.13■□□□□ 0.49
COL7A1-206ENST00000466591 PPP1R9BQ96SB3 815 aa18.13■□□□□ 0.49
COL7A1-206ENST00000466591 SGK2Q9HBY8 427 aa18.13■□□□□ 0.49
COL7A1-206ENST00000466591 SCML1Q9UN30 329 aa18.13■□□□□ 0.49
COL7A1-206ENST00000466591 HYAL3O43820 417 aaPredicted RBP18.12■□□□□ 0.49
COL7A1-206ENST00000466591 HSF2BPO75031 334 aa18.12■□□□□ 0.49
COL7A1-206ENST00000466591 FYNP06241 537 aa18.12■□□□□ 0.49
COL7A1-206ENST00000466591 PROS1P07225 676 aa18.12■□□□□ 0.49
COL7A1-206ENST00000466591 ACSL1P33121 698 aa18.12■□□□□ 0.49
COL7A1-206ENST00000466591 PI4KAP42356 2102 aa18.12■□□□□ 0.49
COL7A1-206ENST00000466591 NME3Q13232 169 aa18.12■□□□□ 0.49
COL7A1-206ENST00000466591 TRIP6Q15654 476 aaKnown RBP18.12■□□□□ 0.49
COL7A1-206ENST00000466591 MAN2A1Q16706 1144 aa18.12■□□□□ 0.49
COL7A1-206ENST00000466591 PITRM1Q5JRX3 1037 aa18.12■□□□□ 0.49
COL7A1-206ENST00000466591 TTC39BQ5VTQ0 682 aaPredicted RBP18.12■□□□□ 0.49
COL7A1-206ENST00000466591 SND1Q7KZF4 910 aaKnown RBP eCLIP18.12■□□□□ 0.49
COL7A1-206ENST00000466591 PIP4P1Q86T03 277 aa18.12■□□□□ 0.49
COL7A1-206ENST00000466591 TMEM110Q86TL2 294 aa18.12■□□□□ 0.49
COL7A1-206ENST00000466591 SLC39A13Q96H72 371 aa18.12■□□□□ 0.49
COL7A1-206ENST00000466591 C6orf106Q9H6K1 298 aaPredicted RBP18.12■□□□□ 0.49
COL7A1-206ENST00000466591 FBXL12Q9NXK8 326 aa18.12■□□□□ 0.49
COL7A1-206ENST00000466591 ERVW-1Q9UQF0 538 aa18.12■□□□□ 0.49
COL7A1-206ENST00000466591 GON4LQ3T8J9 2241 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 EDDM13A0A1B0GTR0 161 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 A0A1B0GVT2 93 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 GTPBP10A4D1E9 387 aaKnown RBP18.11■□□□□ 0.49
COL7A1-206ENST00000466591 KCNU1A8MYU2 1149 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 C1QTNF9BB2RNN3 333 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 SIN3BO75182 1162 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 GRAP2O75791 330 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 RNASEH2AO75792 299 aaKnown RBP18.11■□□□□ 0.49
COL7A1-206ENST00000466591 GLI1P08151 1106 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 SRPRAP08240 638 aaKnown RBP18.11■□□□□ 0.49
COL7A1-206ENST00000466591 C1QTNF9P0C862 333 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 CD59P13987 128 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 RPL34P49207 117 aaKnown RBP18.11■□□□□ 0.49
COL7A1-206ENST00000466591 OXCT1P55809 520 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 C21orf59P57076 290 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 BPIFB4P59827 614 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 ECT2LQ008S8 904 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 MTA1Q13330 715 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 RAPGEF1Q13905 1077 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 SUZ12Q15022 739 aaKnown RBP18.11■□□□□ 0.49
COL7A1-206ENST00000466591 ZNF423Q2M1K9 1284 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 HNRNPA1L2Q32P51 320 aaKnown RBP18.11■□□□□ 0.49
COL7A1-206ENST00000466591 MMS22LQ6ZRQ5 1243 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 C11orf57Q6ZUT1 292 aaPredicted RBP18.11■□□□□ 0.49
COL7A1-206ENST00000466591 KIAA0907Q7Z7F0 614 aaPredicted RBP18.11■□□□□ 0.49
COL7A1-206ENST00000466591 DEFB106AQ8N104 65 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 C1orf131Q8NDD1 294 aaKnown RBP18.11■□□□□ 0.49
COL7A1-206ENST00000466591 TTC17Q96AE7 1141 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 SKA1Q96BD8 255 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 CAMK1GQ96NX5 476 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 RPRD1AQ96P16 312 aaPredicted RBP18.11■□□□□ 0.49
COL7A1-206ENST00000466591 PABPC3Q9H361 631 aaKnown RBP18.11■□□□□ 0.49
COL7A1-206ENST00000466591 MTG2Q9H4K7 406 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 TM7SF3Q9NS93 570 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 DNAJC12Q9UKB3 198 aa18.11■□□□□ 0.49
COL7A1-206ENST00000466591 APOBEC2Q9Y235 224 aaKnown RBP18.11■□□□□ 0.49
COL7A1-206ENST00000466591 ZBTB32Q9Y2Y4 487 aaPredicted RBP18.11■□□□□ 0.49
COL7A1-206ENST00000466591 ACACBO00763 2458 aa18.1■□□□□ 0.49
COL7A1-206ENST00000466591 LRRC72A6NJI9 287 aa18.1■□□□□ 0.49
COL7A1-206ENST00000466591 TOP3BO95985 862 aaKnown RBP18.1■□□□□ 0.49
COL7A1-206ENST00000466591 PON1P27169 355 aa18.1■□□□□ 0.49
COL7A1-206ENST00000466591 PSMD8P48556 350 aa18.1■□□□□ 0.49
COL7A1-206ENST00000466591 CSNK1EP49674 416 aaKnown RBP18.1■□□□□ 0.49
COL7A1-206ENST00000466591 NUMBP49757 651 aa18.1■□□□□ 0.49
COL7A1-206ENST00000466591 APBA1Q02410 837 aa18.1■□□□□ 0.49
COL7A1-206ENST00000466591 HLA-BQ31612 363 aa18.1■□□□□ 0.49
COL7A1-206ENST00000466591 ACCSLQ4AC99 568 aa18.1■□□□□ 0.49
COL7A1-206ENST00000466591 HSP90AA4PQ58FG1 418 aa18.1■□□□□ 0.49
COL7A1-206ENST00000466591 FSCBQ5H9T9 825 aa18.1■□□□□ 0.49
COL7A1-206ENST00000466591 MMAAQ8IVH4 418 aaKnown RBP18.1■□□□□ 0.49
COL7A1-206ENST00000466591 MSANTD4Q8NCY6 345 aa18.1■□□□□ 0.49
COL7A1-206ENST00000466591 SHC3Q92529 594 aa18.1■□□□□ 0.49
COL7A1-206ENST00000466591 NUP62CLQ9H1M0 184 aa18.1■□□□□ 0.49
COL7A1-206ENST00000466591 RSPH9Q9H1X1 276 aaPredicted RBP18.1■□□□□ 0.49
COL7A1-206ENST00000466591 CYTH4Q9UIA0 394 aa18.1■□□□□ 0.49
COL7A1-206ENST00000466591 XPO7Q9UIA9 1087 aaKnown RBP18.1■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms