RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 LGI2Q8N0V4 545 aa18.49■□□□□ 0.55
MSH6-207ENST00000456246 CARNMT1Q8N4J0 409 aa18.49■□□□□ 0.55
MSH6-207ENST00000456246 CADM4Q8NFZ8 388 aa18.49■□□□□ 0.55
MSH6-207ENST00000456246 WFDC5Q8TCV5 224 aa18.49■□□□□ 0.55
MSH6-207ENST00000456246 CYB5D2Q8WUJ1 264 aa18.49■□□□□ 0.55
MSH6-207ENST00000456246 RNF34Q969K3 372 aa18.49■□□□□ 0.55
MSH6-207ENST00000456246 ERLEC1Q96DZ1 483 aa18.49■□□□□ 0.55
MSH6-207ENST00000456246 LMLNQ96KR4 655 aa18.49■□□□□ 0.55
MSH6-207ENST00000456246 HSPA12BQ96MM6 686 aa18.49■□□□□ 0.55
MSH6-207ENST00000456246 SLC6A17Q9H1V8 727 aa18.49■□□□□ 0.55
MSH6-207ENST00000456246 KIAA1522Q9P206 1035 aaPredicted RBP18.49■□□□□ 0.55
MSH6-207ENST00000456246 STAP1Q9ULZ2 295 aa18.49■□□□□ 0.55
MSH6-207ENST00000456246 PAXBP1Q9Y5B6 917 aa18.49■□□□□ 0.55
MSH6-207ENST00000456246 PATE3B3GLJ2 98 aa18.48■□□□□ 0.55
MSH6-207ENST00000456246 H0Y626 953 aa18.48■□□□□ 0.55
MSH6-207ENST00000456246 MATKP42679 507 aa18.48■□□□□ 0.55
MSH6-207ENST00000456246 GABRB2P47870 512 aa18.48■□□□□ 0.55
MSH6-207ENST00000456246 TPMTP51580 245 aa18.48■□□□□ 0.55
MSH6-207ENST00000456246 IRX4P78413 519 aa18.48■□□□□ 0.55
MSH6-207ENST00000456246 SLC12A1Q13621 1099 aa18.48■□□□□ 0.55
MSH6-207ENST00000456246 WDR45BQ5MNZ6 344 aa18.48■□□□□ 0.55
MSH6-207ENST00000456246 CCDC183Q5T5S1 534 aa18.48■□□□□ 0.55
MSH6-207ENST00000456246 PPP1R9BQ96SB3 815 aa18.48■□□□□ 0.55
MSH6-207ENST00000456246 NUP58Q9BVL2 599 aa18.48■□□□□ 0.55
MSH6-207ENST00000456246 PCED1AQ9H1Q7 454 aa18.48■□□□□ 0.55
MSH6-207ENST00000456246 VPS16Q9H269 839 aa18.48■□□□□ 0.55
MSH6-207ENST00000456246 TMEM74BQ9NUR3 256 aa18.48■□□□□ 0.55
MSH6-207ENST00000456246 WSB2Q9NYS7 404 aaPredicted RBP18.48■□□□□ 0.55
MSH6-207ENST00000456246 SLC6A14Q9UN76 642 aa18.48■□□□□ 0.55
MSH6-207ENST00000456246 C4orf47A7E2U8 309 aa18.47■□□□□ 0.55
MSH6-207ENST00000456246 ADRB1P08588 477 aa18.47■□□□□ 0.55
MSH6-207ENST00000456246 SERPINF2P08697 491 aa18.47■□□□□ 0.55
MSH6-207ENST00000456246 HLA-EP13747 358 aa18.47■□□□□ 0.55
MSH6-207ENST00000456246 GNSP15586 552 aa18.47■□□□□ 0.55
MSH6-207ENST00000456246 CSKP41240 450 aa18.47■□□□□ 0.55
MSH6-207ENST00000456246 PITX1P78337 314 aaPredicted RBP18.47■□□□□ 0.55
MSH6-207ENST00000456246 ACBD5Q5T8D3 534 aaPredicted RBP18.47■□□□□ 0.55
MSH6-207ENST00000456246 ERICH1Q86X53 443 aa18.47■□□□□ 0.55
MSH6-207ENST00000456246 SLC41A1Q8IVJ1 513 aa18.47■□□□□ 0.55
MSH6-207ENST00000456246 EPS8L1Q8TE68 723 aa18.47■□□□□ 0.55
MSH6-207ENST00000456246 C18orf8Q96DM3 657 aa18.47■□□□□ 0.55
MSH6-207ENST00000456246 TOE1Q96GM8 510 aaKnown RBP18.47■□□□□ 0.55
MSH6-207ENST00000456246 PRMT1Q99873 361 aaKnown RBP18.47■□□□□ 0.55
MSH6-207ENST00000456246 GANQ9H2C0 597 aa18.47■□□□□ 0.55
MSH6-207ENST00000456246 FANCLQ9NW38 375 aa18.47■□□□□ 0.55
MSH6-207ENST00000456246 XPO7Q9UIA9 1087 aaKnown RBP18.47■□□□□ 0.55
MSH6-207ENST00000456246 ATXN2Q99700 1313 aaKnown RBP18.47■□□□□ 0.55
MSH6-207ENST00000456246 LAMA1P25391 3075 aa18.46■□□□□ 0.55
MSH6-207ENST00000456246 A0A1B0GVM2 712 aa18.46■□□□□ 0.55
MSH6-207ENST00000456246 TCAF2A6NFQ2 919 aa18.46■□□□□ 0.55
MSH6-207ENST00000456246 GRAP2O75791 330 aa18.46■□□□□ 0.55
MSH6-207ENST00000456246 F9P00740 461 aa18.46■□□□□ 0.55
MSH6-207ENST00000456246 CFIP05156 583 aa18.46■□□□□ 0.55
MSH6-207ENST00000456246 SRPRAP08240 638 aaKnown RBP18.46■□□□□ 0.55
MSH6-207ENST00000456246 ATXN3P54252 364 aaPredicted RBP18.46■□□□□ 0.55
MSH6-207ENST00000456246 GFPT1Q06210 699 aaPredicted RBP18.46■□□□□ 0.55
MSH6-207ENST00000456246 SFSWAPQ12872 951 aaKnown RBP18.46■□□□□ 0.55
MSH6-207ENST00000456246 ARID5BQ14865 1188 aa18.46■□□□□ 0.55
MSH6-207ENST00000456246 TTC31Q49AM3 519 aaPredicted RBP18.46■□□□□ 0.55
MSH6-207ENST00000456246 PITRM1Q5JRX3 1037 aa18.46■□□□□ 0.55
MSH6-207ENST00000456246 BRMS1LQ5PSV4 323 aa18.46■□□□□ 0.55
MSH6-207ENST00000456246 SND1Q7KZF4 910 aaKnown RBP eCLIP18.46■□□□□ 0.55
MSH6-207ENST00000456246 RGL4Q8IZJ4 473 aa18.46■□□□□ 0.55
MSH6-207ENST00000456246 CFAP52Q8N1V2 620 aa18.46■□□□□ 0.55
MSH6-207ENST00000456246 MYEOVQ96EZ4 313 aa18.46■□□□□ 0.55
MSH6-207ENST00000456246 PGAP3Q96FM1 320 aaPredicted RBP18.46■□□□□ 0.55
MSH6-207ENST00000456246 CD93Q9NPY3 652 aa18.46■□□□□ 0.55
MSH6-207ENST00000456246 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.46■□□□□ 0.552e-7■■■■□ 21.4
MSH6-207ENST00000456246 SCML1Q9UN30 329 aa18.46■□□□□ 0.55
MSH6-207ENST00000456246 SYNJ2BP-COX16A0A087WUM0 186 aa18.45■□□□□ 0.54
MSH6-207ENST00000456246 MEI4A8MW99 385 aa18.45■□□□□ 0.54
MSH6-207ENST00000456246 M0QYT0 321 aa18.45■□□□□ 0.54
MSH6-207ENST00000456246 CDX4O14627 284 aaPredicted RBP18.45■□□□□ 0.54
MSH6-207ENST00000456246 DNTTP04053 509 aa18.45■□□□□ 0.54
MSH6-207ENST00000456246 SYPP08247 313 aa18.45■□□□□ 0.54
MSH6-207ENST00000456246 ENGP17813 658 aa18.45■□□□□ 0.54
MSH6-207ENST00000456246 SULT2A1Q06520 285 aa18.45■□□□□ 0.54
MSH6-207ENST00000456246 NME3Q13232 169 aa18.45■□□□□ 0.54
MSH6-207ENST00000456246 PLEKHG6Q3KR16 790 aa18.45■□□□□ 0.54
MSH6-207ENST00000456246 RNF219Q5W0B1 726 aaPredicted RBP18.45■□□□□ 0.54
MSH6-207ENST00000456246 ARCQ7LC44 396 aa18.45■□□□□ 0.54
MSH6-207ENST00000456246 DEFB119Q8N690 84 aa18.45■□□□□ 0.54
MSH6-207ENST00000456246 DNASE2BQ8WZ79 361 aa18.45■□□□□ 0.54
MSH6-207ENST00000456246 SPAG5Q96R06 1193 aa18.45■□□□□ 0.54
MSH6-207ENST00000456246 NPY6RQ99463 290 aa18.45■□□□□ 0.54
MSH6-207ENST00000456246 CAPN10Q9HC96 672 aa18.45■□□□□ 0.54
MSH6-207ENST00000456246 PRSS16Q9NQE7 514 aa18.45■□□□□ 0.54
MSH6-207ENST00000456246 FAM207AQ9NSI2 230 aaPredicted RBP18.45■□□□□ 0.54
MSH6-207ENST00000456246 COX16Q9P0S2 106 aa18.45■□□□□ 0.54
MSH6-207ENST00000456246 LIMA1Q9UHB6 759 aaKnown RBP18.45■□□□□ 0.54
MSH6-207ENST00000456246 INTS6Q9UL03 887 aaKnown RBP18.45■□□□□ 0.54
MSH6-207ENST00000456246 CACNA1EQ15878 2313 aa18.45■□□□□ 0.54
MSH6-207ENST00000456246 LGALS16A8MUM7 142 aa18.44■□□□□ 0.54
MSH6-207ENST00000456246 RNASEH1O60930 286 aaKnown RBP18.44■□□□□ 0.54
MSH6-207ENST00000456246 NNMTP40261 264 aa18.44■□□□□ 0.54
MSH6-207ENST00000456246 COPB1P53618 953 aaKnown RBP18.44■□□□□ 0.54
MSH6-207ENST00000456246 POLR2FP61218 127 aaKnown RBP18.44■□□□□ 0.54
MSH6-207ENST00000456246 NOMO3P69849 1222 aa18.44■□□□□ 0.54
MSH6-207ENST00000456246 ECT2LQ008S8 904 aa18.44■□□□□ 0.54
MSH6-207ENST00000456246 HNRNPA1L2Q32P51 320 aaKnown RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms