RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 PRPF4O43172 522 aaKnown RBP eCLIP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 RIPK2O43353 540 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 TBL1XO60907 577 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 ATP5BP06576 529 aaKnown RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 CLTBP09497 229 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 SSTR1P30872 391 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 ASPAP45381 313 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 GTF2A1P52655 376 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 BCL2L1Q07817 233 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 TIGD5Q53EQ6 642 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 KIRREL3Q8IZU9 778 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 PRELID2Q8N945 189 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 CSGALNACT1Q8TDX6 532 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 ALG3Q92685 438 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 FAXDC2Q96IV6 333 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 FCRL2Q96LA5 508 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 CCT8L2Q96SF2 557 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 OXCT2Q9BYC2 517 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 UNC93B1Q9H1C4 597 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 MANSC1Q9H8J5 431 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 ARL2BPQ9Y2Y0 163 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 SCN7AQ01118 1682 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 A0A0U1RQF3 1178 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 PMM2O15305 246 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 CNMDO75829 334 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 APOA4P06727 396 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 FAM153BP0C7A2 387 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 PSMB4P28070 264 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 TKTP29401 623 aaKnown RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 LSP1P33241 339 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 IL1RL1Q01638 556 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 FAM153CQ494X1 144 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 C17orf99Q6UX52 265 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 TMC3Q7Z5M5 1100 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 SNX31Q8N9S9 440 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 HIPK4Q8NE63 616 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 CASS4Q9NQ75 786 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 GDF3Q9NR23 364 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 DCDC2Q9UHG0 476 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 NOCTQ9UK39 431 aaKnown RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 ZMYND8Q9ULU4 1186 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 RUVBL2Q9Y230 463 aaKnown RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 ANKRD65E5RJM6 399 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 SPTLC1O15269 473 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 MSI1O43347 362 aaKnown RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 SOAT2O75908 522 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 TYMPP19971 482 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 CNTFP26441 200 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 SLC8A1P32418 973 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 ALDH18A1P54886 795 aaKnown RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 PREPLQ4J6C6 727 aaPredicted RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 SPDYAQ5MJ70 313 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 CES3Q6UWW8 571 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 CTU1Q7Z7A3 348 aaKnown RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 MAB21L3Q8N8X9 362 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 PRKD2Q9BZL6 878 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 TLE6Q9H808 572 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 TMBIM4Q9HC24 238 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 PCYOX1Q9UHG3 505 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 PAGE1O75459 146 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 PCDH8O95206 1070 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 LUC7L3O95232 432 aaKnown RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 LCA5LO95447 670 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 SERPIND1P05546 499 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 PGAM1P18669 254 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 CDC25CP30307 473 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 FNDC3BQ53EP0 1204 aaKnown RBP7.58□□□□□ -1.2
SYNE1-213ENST00000448038 LRRC19Q9H756 370 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 ETNK1Q9HBU6 452 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 PCDH18Q9HCL0 1135 aa7.58□□□□□ -1.2
SYNE1-213ENST00000448038 TBC1D3BA6NDS4 549 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 TMEM247A6NEH6 219 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 FSCN2O14926 492 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 TRIM16O95361 564 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 CCNB1P14635 433 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 CHRNB2P17787 502 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 ADRA1BP35368 520 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 HOXD13P35453 343 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 GLRBP48167 497 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 BMPR2Q13873 1038 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 NLRP9Q7RTR0 991 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 PSTKQ8IV42 348 aaKnown RBP7.57□□□□□ -1.2
SYNE1-213ENST00000448038 TBC1D19Q8N5T2 526 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 NINJ2Q9NZG7 142 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 PKD2L2Q9NZM6 624 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 CACNG4Q9UBN1 327 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 GGT7Q9UJ14 662 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 RAB21Q9UL25 225 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 MARF1Q9Y4F3 1742 aaKnown RBP7.57□□□□□ -1.2
SYNE1-213ENST00000448038 ACADMP11310 421 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 AIF1P55008 147 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 SOWAHAQ2M3V2 549 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 HSP90AA5PQ58FG0 334 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 ARMC12Q5T9G4 340 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 ZNF697Q5TEC3 545 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 ERAP2Q6P179 960 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 SLC26A9Q7LBE3 791 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 GLT6D1Q7Z4J2 308 aa7.57□□□□□ -1.2
SYNE1-213ENST00000448038 KCNMB4Q86W47 210 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms