RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 THAP10Q9P2Z0 257 aaPredicted RBP16.92■□□□□ 0.3
SF3A1-204ENST00000447376 XPO7Q9UIA9 1087 aaKnown RBP16.92■□□□□ 0.3
SF3A1-204ENST00000447376 TMCO5BA8MYB1 307 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 PAGE1O75459 146 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 ASLP04424 464 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 HOXD11P31277 338 aaPredicted RBP16.91■□□□□ 0.3
SF3A1-204ENST00000447376 PTPN9P43378 593 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 TBX2Q13207 712 aaPredicted RBP16.91■□□□□ 0.3
SF3A1-204ENST00000447376 SLC12A1Q13621 1099 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 ELF2Q15723 593 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 RNF219Q5W0B1 726 aaPredicted RBP16.91■□□□□ 0.3
SF3A1-204ENST00000447376 HGSNATQ68CP4 663 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 MBLAC2Q68D91 279 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 LAIR1Q6GTX8 287 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 TMEM92Q6UXU6 159 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 ASCL5Q7RTU5 278 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 CFAP52Q8N1V2 620 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 RXFP2Q8WXD0 754 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 GABRG3Q99928 467 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 TPSD1Q9BZJ3 242 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 DEF6Q9H4E7 631 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 ABHD10Q9NUJ1 306 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 ARHGEF38Q9NXL2 777 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 CACNA2D2Q9NY47 1150 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 ADAMTS1Q9UHI8 967 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 VANGL2Q9ULK5 521 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 CLEC4EQ9ULY5 219 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 STON1Q9Y6Q2 735 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 FANCMQ8IYD8 2048 aa16.91■□□□□ 0.3
SF3A1-204ENST00000447376 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.9■□□□□ 0.3
SF3A1-204ENST00000447376 SIGLEC16A6NMB1 481 aa16.9■□□□□ 0.3
SF3A1-204ENST00000447376 GOLGA6L6A8MZA4 724 aa16.9■□□□□ 0.3
SF3A1-204ENST00000447376 ADAM23O75077 832 aa16.9■□□□□ 0.3
SF3A1-204ENST00000447376 RTN2O75298 545 aa16.9■□□□□ 0.3
SF3A1-204ENST00000447376 CLDN11O75508 207 aa16.9■□□□□ 0.3
SF3A1-204ENST00000447376 EPHX1P07099 455 aa16.9■□□□□ 0.3
SF3A1-204ENST00000447376 DLDP09622 509 aaKnown RBP16.9■□□□□ 0.3
SF3A1-204ENST00000447376 GPD1P21695 349 aa16.9■□□□□ 0.3
SF3A1-204ENST00000447376 ADKP55263 362 aaKnown RBP16.9■□□□□ 0.3
SF3A1-204ENST00000447376 PTP4A2Q12974 167 aa16.9■□□□□ 0.3
SF3A1-204ENST00000447376 ZNF177Q13360 481 aaPredicted RBP16.9■□□□□ 0.3
SF3A1-204ENST00000447376 AUHQ13825 339 aaKnown RBP16.9■□□□□ 0.3
SF3A1-204ENST00000447376 ARID5BQ14865 1188 aa16.9■□□□□ 0.3
SF3A1-204ENST00000447376 FBXL22Q6P050 247 aa16.9■□□□□ 0.3
SF3A1-204ENST00000447376 STRADAQ7RTN6 431 aa16.9■□□□□ 0.3
SF3A1-204ENST00000447376 RASSF3Q86WH2 238 aa16.9■□□□□ 0.3
SF3A1-204ENST00000447376 MCOLN2Q8IZK6 566 aa16.9■□□□□ 0.3
SF3A1-204ENST00000447376 MDGA1Q8NFP4 955 aa16.9■□□□□ 0.3
SF3A1-204ENST00000447376 PARVAQ9NVD7 372 aa16.9■□□□□ 0.3
SF3A1-204ENST00000447376 HS3ST4Q9Y661 456 aa16.9■□□□□ 0.3
SF3A1-204ENST00000447376 SCINQ9Y6U3 715 aa16.9■□□□□ 0.3
SF3A1-204ENST00000447376 C2CD4BA6NLJ0 364 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 DDX3XO00571 662 aaKnown RBP eCLIP16.89■□□□□ 0.294e-8■■■■□ 21.7
SF3A1-204ENST00000447376 MAP3K13O43283 966 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 HRO43593 1189 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 RHOBTB1O94844 696 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 ADCY5O95622 1261 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 FTLP02792 175 aaPredicted RBP16.89■□□□□ 0.29
SF3A1-204ENST00000447376 MYBL1P10243 752 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 NNMTP40261 264 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 LMAN2Q12907 356 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 ZNF234Q14588 700 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 RNF43Q68DV7 783 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 FAM131BQ86XD5 332 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 CCAR2Q8N163 923 aaKnown RBP16.89■□□□□ 0.29
SF3A1-204ENST00000447376 SUMF1Q8NBK3 374 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 JOSD2Q8TAC2 188 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 FAM172AQ8WUF8 416 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 P2RY11Q96G91 374 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 C1orf74Q96LT6 269 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 MCEEQ96PE7 176 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 HAPLN3Q96S86 360 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 ACOX2Q99424 681 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 PRMT1Q99873 361 aaKnown RBP16.89■□□□□ 0.29
SF3A1-204ENST00000447376 ARHGAP20Q9P2F6 1191 aa16.89■□□□□ 0.29
SF3A1-204ENST00000447376 SSU72P8A0A1W2PR75 194 aa16.88■□□□□ 0.29
SF3A1-204ENST00000447376 ANTXRLA6NF34 631 aa16.88■□□□□ 0.29
SF3A1-204ENST00000447376 AKR1B10O60218 316 aa16.88■□□□□ 0.29
SF3A1-204ENST00000447376 ZNF217O75362 1048 aa16.88■□□□□ 0.29
SF3A1-204ENST00000447376 PLEKP08567 350 aaPredicted RBP16.88■□□□□ 0.29
SF3A1-204ENST00000447376 TFE3P19532 575 aaPredicted RBP16.88■□□□□ 0.29
SF3A1-204ENST00000447376 RRM1P23921 792 aa16.88■□□□□ 0.29
SF3A1-204ENST00000447376 CDC25BP30305 580 aa16.88■□□□□ 0.29
SF3A1-204ENST00000447376 CD70P32970 193 aa16.88■□□□□ 0.29
SF3A1-204ENST00000447376 RFC1P35251 1148 aaPredicted RBP16.88■□□□□ 0.29
SF3A1-204ENST00000447376 EIF4A3P38919 411 aaKnown RBP16.88■□□□□ 0.29
SF3A1-204ENST00000447376 IL12RB1P42701 662 aa16.88■□□□□ 0.29
SF3A1-204ENST00000447376 CDH4P55283 916 aa16.88■□□□□ 0.29
SF3A1-204ENST00000447376 SULT2A1Q06520 285 aa16.88■□□□□ 0.29
SF3A1-204ENST00000447376 SRSF5Q13243 272 aaKnown RBP16.88■□□□□ 0.29
SF3A1-204ENST00000447376 LPAL2Q16609 132 aa16.88■□□□□ 0.29
SF3A1-204ENST00000447376 C15orf59Q2T9L4 293 aaPredicted RBP16.88■□□□□ 0.29
SF3A1-204ENST00000447376 CCDC14Q49A88 953 aa16.88■□□□□ 0.29
SF3A1-204ENST00000447376 OTUD1Q5VV17 481 aaPredicted RBP16.88■□□□□ 0.29
SF3A1-204ENST00000447376 KIAA0907Q7Z7F0 614 aaPredicted RBP16.88■□□□□ 0.29
SF3A1-204ENST00000447376 GPR161Q8N6U8 529 aaKnown RBP16.88■□□□□ 0.29
SF3A1-204ENST00000447376 CCDC42Q96M95 316 aa16.88■□□□□ 0.29
SF3A1-204ENST00000447376 FBRSQ9HAH7 460 aa16.88■□□□□ 0.29
SF3A1-204ENST00000447376 MRPL47Q9HD33 250 aaKnown RBP16.88■□□□□ 0.29
SF3A1-204ENST00000447376 SUN2Q9UH99 717 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms