RNA–Protein interactions for RNA: ENST00000443727.1

LRCH3-208, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 4

Gene LRCH3, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-208ENST00000443727 FAM170AA1A519 330 aa20.77■□□□□ 0.92
LRCH3-208ENST00000443727 CSKP41240 450 aa20.77■□□□□ 0.92
LRCH3-208ENST00000443727 COPAP53621 1224 aa20.77■□□□□ 0.92
LRCH3-208ENST00000443727 MYL5Q02045 173 aa20.77■□□□□ 0.92
LRCH3-208ENST00000443727 CAMK2GQ13555 558 aaPredicted RBP20.77■□□□□ 0.92
LRCH3-208ENST00000443727 PTPRNQ16849 979 aa20.77■□□□□ 0.92
LRCH3-208ENST00000443727 DUOXA1Q1HG43 343 aa20.77■□□□□ 0.92
LRCH3-208ENST00000443727 RABGAP1LQ5R372 815 aa20.77■□□□□ 0.92
LRCH3-208ENST00000443727 C18orf8Q96DM3 657 aa20.77■□□□□ 0.92
LRCH3-208ENST00000443727 KIAA1522Q9P206 1035 aaPredicted RBP20.77■□□□□ 0.92
LRCH3-208ENST00000443727 USP36Q9P275 1121 aaKnown RBP20.77■□□□□ 0.92
LRCH3-208ENST00000443727 SUN2Q9UH99 717 aa20.77■□□□□ 0.92
LRCH3-208ENST00000443727 GON4LQ3T8J9 2241 aa20.77■□□□□ 0.91
LRCH3-208ENST00000443727 MEI4A8MW99 385 aa20.76■□□□□ 0.91
LRCH3-208ENST00000443727 M0QYT0 321 aa20.76■□□□□ 0.91
LRCH3-208ENST00000443727 LSM8O95777 96 aaKnown RBP20.76■□□□□ 0.91
LRCH3-208ENST00000443727 ASLP04424 464 aa20.76■□□□□ 0.91
LRCH3-208ENST00000443727 CDK11BP21127 795 aaKnown RBP20.76■□□□□ 0.91
LRCH3-208ENST00000443727 NOS2P35228 1153 aa20.76■□□□□ 0.91
LRCH3-208ENST00000443727 MAPK8P45983 427 aa20.76■□□□□ 0.91
LRCH3-208ENST00000443727 POLR2FP61218 127 aaKnown RBP20.76■□□□□ 0.91
LRCH3-208ENST00000443727 GFPT1Q06210 699 aaPredicted RBP20.76■□□□□ 0.91
LRCH3-208ENST00000443727 MTA1Q13330 715 aa20.76■□□□□ 0.91
LRCH3-208ENST00000443727 FSCBQ5H9T9 825 aa20.76■□□□□ 0.91
LRCH3-208ENST00000443727 WDR45BQ5MNZ6 344 aa20.76■□□□□ 0.91
LRCH3-208ENST00000443727 MMS22LQ6ZRQ5 1243 aa20.76■□□□□ 0.91
LRCH3-208ENST00000443727 NOP9Q86U38 636 aaKnown RBP20.76■□□□□ 0.91
LRCH3-208ENST00000443727 FAM124AQ86V42 546 aa20.76■□□□□ 0.91
LRCH3-208ENST00000443727 SLC41A1Q8IVJ1 513 aa20.76■□□□□ 0.91
LRCH3-208ENST00000443727 ZNF397Q8NF99 534 aaPredicted RBP20.76■□□□□ 0.91
LRCH3-208ENST00000443727 NUP58Q9BVL2 599 aa20.76■□□□□ 0.91
LRCH3-208ENST00000443727 GPR174Q9BXC1 333 aa20.76■□□□□ 0.91
LRCH3-208ENST00000443727 FBRSQ9HAH7 460 aa20.76■□□□□ 0.91
LRCH3-208ENST00000443727 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP20.76■□□□□ 0.91
LRCH3-208ENST00000443727 STAP1Q9ULZ2 295 aa20.76■□□□□ 0.91
LRCH3-208ENST00000443727 GFPT2O94808 682 aa20.75■□□□□ 0.91
LRCH3-208ENST00000443727 CDH5P33151 784 aaPredicted RBP20.75■□□□□ 0.91
LRCH3-208ENST00000443727 MATKP42679 507 aa20.75■□□□□ 0.91
LRCH3-208ENST00000443727 KLK7P49862 253 aa20.75■□□□□ 0.91
LRCH3-208ENST00000443727 COPB1P53618 953 aaKnown RBP20.75■□□□□ 0.91
LRCH3-208ENST00000443727 ATXN3P54252 364 aaPredicted RBP20.75■□□□□ 0.91
LRCH3-208ENST00000443727 UAP1L1Q3KQV9 507 aa20.75■□□□□ 0.91
LRCH3-208ENST00000443727 PITRM1Q5JRX3 1037 aa20.75■□□□□ 0.91
LRCH3-208ENST00000443727 FAM102AQ5T9C2 384 aaPredicted RBP20.75■□□□□ 0.91
LRCH3-208ENST00000443727 TTC39BQ5VTQ0 682 aaPredicted RBP20.75■□□□□ 0.91
LRCH3-208ENST00000443727 RNF219Q5W0B1 726 aaPredicted RBP20.75■□□□□ 0.91
LRCH3-208ENST00000443727 SLC23A3Q6PIS1 610 aa20.75■□□□□ 0.91
LRCH3-208ENST00000443727 SND1Q7KZF4 910 aaKnown RBP eCLIP20.75■□□□□ 0.91
LRCH3-208ENST00000443727 TTC17Q96AE7 1141 aa20.75■□□□□ 0.91
LRCH3-208ENST00000443727 ZNF419Q96HQ0 510 aaPredicted RBP20.75■□□□□ 0.91
LRCH3-208ENST00000443727 LMLNQ96KR4 655 aa20.75■□□□□ 0.91
LRCH3-208ENST00000443727 SPAG5Q96R06 1193 aa20.75■□□□□ 0.91
LRCH3-208ENST00000443727 GANQ9H2C0 597 aa20.75■□□□□ 0.91
LRCH3-208ENST00000443727 PRSS16Q9NQE7 514 aa20.75■□□□□ 0.91
LRCH3-208ENST00000443727 WSB2Q9NYS7 404 aaPredicted RBP20.75■□□□□ 0.91
LRCH3-208ENST00000443727 RRN3Q9NYV6 651 aa20.75■□□□□ 0.91
LRCH3-208ENST00000443727 SLC6A14Q9UN76 642 aa20.75■□□□□ 0.91
LRCH3-208ENST00000443727 GOLGA8SH3BPF8 625 aa20.74■□□□□ 0.91
LRCH3-208ENST00000443727 MMEP08473 750 aa20.74■□□□□ 0.91
LRCH3-208ENST00000443727 GNSP15586 552 aa20.74■□□□□ 0.91
LRCH3-208ENST00000443727 ENGP17813 658 aa20.74■□□□□ 0.91
LRCH3-208ENST00000443727 EIF4EBP2Q13542 120 aaPredicted RBP20.74■□□□□ 0.91
LRCH3-208ENST00000443727 PEAR1Q5VY43 1037 aaPredicted RBP20.74■□□□□ 0.91
LRCH3-208ENST00000443727 CPA5Q8WXQ8 436 aa20.74■□□□□ 0.91
LRCH3-208ENST00000443727 RPRD1AQ96P16 312 aaPredicted RBP20.74■□□□□ 0.91
LRCH3-208ENST00000443727 GTPBP2Q9BX10 602 aaKnown RBP20.74■□□□□ 0.91
LRCH3-208ENST00000443727 NLRC4Q9NPP4 1024 aa20.74■□□□□ 0.91
LRCH3-208ENST00000443727 SUSD2Q9UGT4 822 aa20.74■□□□□ 0.91
LRCH3-208ENST00000443727 INTS6Q9UL03 887 aaKnown RBP20.74■□□□□ 0.91
LRCH3-208ENST00000443727 TM4SF5O14894 197 aa20.73■□□□□ 0.91
LRCH3-208ENST00000443727 DNTTP04053 509 aa20.73■□□□□ 0.91
LRCH3-208ENST00000443727 SERPINF2P08697 491 aa20.73■□□□□ 0.91
LRCH3-208ENST00000443727 SULT1E1P49888 294 aa20.73■□□□□ 0.91
LRCH3-208ENST00000443727 ECT2LQ008S8 904 aa20.73■□□□□ 0.91
LRCH3-208ENST00000443727 AUHQ13825 339 aaKnown RBP20.73■□□□□ 0.91
LRCH3-208ENST00000443727 SYCP1Q15431 976 aa20.73■□□□□ 0.91
LRCH3-208ENST00000443727 TTC31Q49AM3 519 aaPredicted RBP20.73■□□□□ 0.91
LRCH3-208ENST00000443727 NAA35Q5VZE5 725 aa20.73■□□□□ 0.91
LRCH3-208ENST00000443727 CIR1Q86X95 450 aaPredicted RBP20.73■□□□□ 0.91
LRCH3-208ENST00000443727 ZNF677Q86XU0 584 aa20.73■□□□□ 0.91
LRCH3-208ENST00000443727 CCAR2Q8N163 923 aaKnown RBP20.73■□□□□ 0.91
LRCH3-208ENST00000443727 CADM4Q8NFZ8 388 aa20.73■□□□□ 0.91
LRCH3-208ENST00000443727 NEK11Q8NG66 645 aa20.73■□□□□ 0.91
LRCH3-208ENST00000443727 EPS8L1Q8TE68 723 aa20.73■□□□□ 0.91
LRCH3-208ENST00000443727 PRMT1Q99873 361 aaKnown RBP20.73■□□□□ 0.91
LRCH3-208ENST00000443727 NAT10Q9H0A0 1025 aaKnown RBP20.73■□□□□ 0.91
LRCH3-208ENST00000443727 SIK2Q9H0K1 926 aa20.73■□□□□ 0.91
LRCH3-208ENST00000443727 LIMA1Q9UHB6 759 aaKnown RBP20.73■□□□□ 0.91
LRCH3-208ENST00000443727 VANGL2Q9ULK5 521 aa20.73■□□□□ 0.91
LRCH3-208ENST00000443727 ERVW-1Q9UQF0 538 aa20.73■□□□□ 0.91
LRCH3-208ENST00000443727 DAAM1Q9Y4D1 1078 aa20.73■□□□□ 0.91
LRCH3-208ENST00000443727 PAXBP1Q9Y5B6 917 aa20.73■□□□□ 0.91
LRCH3-208ENST00000443727 CNOT1A5YKK6 2376 aaKnown RBP20.72■□□□□ 0.91
LRCH3-208ENST00000443727 A0A1B0GVM2 712 aa20.72■□□□□ 0.91
LRCH3-208ENST00000443727 TCAF2A6NFQ2 919 aa20.72■□□□□ 0.91
LRCH3-208ENST00000443727 CDX4O14627 284 aaPredicted RBP20.72■□□□□ 0.91
LRCH3-208ENST00000443727 RNASEH1O60930 286 aaKnown RBP20.72■□□□□ 0.91
LRCH3-208ENST00000443727 PAGE1O75459 146 aa20.72■□□□□ 0.91
LRCH3-208ENST00000443727 IGLV3-19P01714 112 aa20.72■□□□□ 0.91
LRCH3-208ENST00000443727 SRPRAP08240 638 aaKnown RBP20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms