RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 IFNEQ86WN2 208 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 ZNF513Q8N8E2 541 aaPredicted RBP9.27□□□□□ -0.92
COPB1-202ENST00000439561 CMASQ8NFW8 434 aaPredicted RBP9.27□□□□□ -0.92
COPB1-202ENST00000439561 PCDH19Q8TAB3 1148 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 CYGBQ8WWM9 190 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 ATP6V1E2Q96A05 226 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 GPRASP2Q96D09 838 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 WNK4Q96J92 1243 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 BTBD9Q96Q07 612 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 HAPLN3Q96S86 360 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 CIB1Q99828 191 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 PKP2Q99959 881 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 B3GNT5Q9BYG0 378 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 EFCAB1Q9HAE3 211 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 PCDH18Q9HCL0 1135 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 SNX15Q9NRS6 342 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 BFARQ9NZS9 450 aa9.27□□□□□ -0.92
COPB1-202ENST00000439561 RSL24D1Q9UHA3 163 aaKnown RBP9.27□□□□□ -0.92
COPB1-202ENST00000439561 MYO18AQ92614 2054 aaKnown RBP9.27□□□□□ -0.92
COPB1-202ENST00000439561 A0A0J9YVX5 310 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 B4GALT5O43286 388 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 TRIM13O60858 407 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 DNAJA2O60884 412 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 TFAP2AP05549 437 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 NFICP08651 508 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 PDGFRBP09619 1106 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 TFPTP0C1Z6 253 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 PTGER2P43116 358 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 PSMD7P51665 324 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 NDST1P52848 882 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 XIAPP98170 497 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 RALGDSQ12967 914 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 STILQ15468 1287 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 STXBP2Q15833 593 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 TTC33Q6PID6 262 aaPredicted RBP9.27□□□□□ -0.93
COPB1-202ENST00000439561 UGT2A3Q6UWM9 527 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 RMND5BQ96G75 393 aaPredicted RBP9.27□□□□□ -0.93
COPB1-202ENST00000439561 HPDLQ96IR7 371 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 MAGEB5Q9BZ81 275 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 USP29Q9HBJ7 922 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 CYP4F12Q9HCS2 524 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 UBAP1Q9NZ09 502 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 SNX9Q9Y5X1 595 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 MRPL42Q9Y6G3 142 aaKnown RBP9.27□□□□□ -0.93
COPB1-202ENST00000439561 ADCY6O43306 1168 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 TGM2P21980 687 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 PSMB4P28070 264 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 GP5P40197 560 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 NAA20P61599 178 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 PCLAFQ15004 111 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 GLRA4Q5JXX5 417 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 ZBTB49Q6ZSB9 765 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 GPR141Q7Z602 305 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 NIPA2Q8N8Q9 360 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 PDZD8Q8NEN9 1154 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 RDM1Q8NG50 284 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 PCDHAC1Q9H158 963 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 UPF3AQ9H1J1 476 aaKnown RBP9.27□□□□□ -0.93
COPB1-202ENST00000439561 PRM3Q9NNZ6 103 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 IARS2Q9NSE4 1012 aaKnown RBP9.27□□□□□ -0.93
COPB1-202ENST00000439561 SYBUQ9NX95 663 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 CCDC167Q9P0B6 97 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 AP4E1Q9UPM8 1137 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 SH3BP1Q9Y3L3 701 aa9.27□□□□□ -0.93
COPB1-202ENST00000439561 RGSL1A5PLK6 1076 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 BOLA2-SMG1P6H3BVE0 249 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 RNF103O00237 685 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 XPOTO43592 962 aaKnown RBP9.26□□□□□ -0.93
COPB1-202ENST00000439561 ALDOAP04075 364 aaKnown RBP9.26□□□□□ -0.93
COPB1-202ENST00000439561 PRKCHP24723 683 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 PTPN7P35236 360 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 ADGRE1Q14246 886 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 PDK2Q15119 407 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 MTX3Q5HYI7 312 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 FAM160B1Q5W0V3 765 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 EEF1DP3Q658K8 133 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 UBR7Q8N806 425 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 OR52K1Q8NGK4 314 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 GIPC3Q8TF64 312 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 HTR3CQ8WXA8 447 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 LRRC39Q96DD0 335 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 PRICKLE1Q96MT3 831 aaPredicted RBP9.26□□□□□ -0.93
COPB1-202ENST00000439561 ZNF778Q96MU6 729 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 OMDQ99983 421 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 CDH19Q9H159 772 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 STK39Q9UEW8 545 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 MYH9P35579 1960 aaKnown RBP9.26□□□□□ -0.93
COPB1-202ENST00000439561 PAPSS1O43252 624 aaPredicted RBP9.26□□□□□ -0.93
COPB1-202ENST00000439561 SNNO75324 88 aaPredicted RBP9.26□□□□□ -0.93
COPB1-202ENST00000439561 CNTFP26441 200 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 PCSK6P29122 969 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 CLCN3P51790 818 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 IRF9Q00978 393 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 KIF19Q2TAC6 998 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 SH3D19Q5HYK7 790 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 PATL1Q86TB9 770 aaKnown RBP9.26□□□□□ -0.93
COPB1-202ENST00000439561 USP33Q8TEY7 942 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 TMIGD2Q96BF3 282 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 RTKNQ9BST9 563 aa9.26□□□□□ -0.93
COPB1-202ENST00000439561 ELOVL4Q9GZR5 314 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms