RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 KCNK3O14649 394 aa15.04■□□□□ -0
SDC1-204ENST00000429035 P4HA2O15460 535 aa15.04■□□□□ -0
SDC1-204ENST00000429035 SART1O43290 800 aaKnown RBP15.04■□□□□ -0
SDC1-204ENST00000429035 THAP12O43422 761 aa15.04■□□□□ -0
SDC1-204ENST00000429035 RNASEH1O60930 286 aaKnown RBP15.04■□□□□ -0
SDC1-204ENST00000429035 MOCS3O95396 460 aa15.04■□□□□ -0
SDC1-204ENST00000429035 AFPP02771 609 aaKnown RBP15.04■□□□□ -0
SDC1-204ENST00000429035 PSMD8P48556 350 aa15.04■□□□□ -0
SDC1-204ENST00000429035 CCT8P50990 548 aa15.04■□□□□ -0
SDC1-204ENST00000429035 GCNT1Q02742 428 aa15.04■□□□□ -0
SDC1-204ENST00000429035 ZBTB16Q05516 673 aa15.04■□□□□ -0
SDC1-204ENST00000429035 SCAPQ12770 1279 aa15.04■□□□□ -0
SDC1-204ENST00000429035 KCNH2Q12809 1159 aa15.04■□□□□ -0
SDC1-204ENST00000429035 PAK1Q13153 545 aa15.04■□□□□ -0
SDC1-204ENST00000429035 MPP7Q5T2T1 576 aa15.04■□□□□ -0
SDC1-204ENST00000429035 RNF219Q5W0B1 726 aaPredicted RBP15.04■□□□□ -0
SDC1-204ENST00000429035 KIAA0907Q7Z7F0 614 aaPredicted RBP15.04■□□□□ -0
SDC1-204ENST00000429035 SCUBE3Q8IX30 993 aa15.04■□□□□ -0
SDC1-204ENST00000429035 KREMEN1Q96MU8 473 aa15.04■□□□□ -0
SDC1-204ENST00000429035 PABPC3Q9H361 631 aaKnown RBP15.04■□□□□ -0
SDC1-204ENST00000429035 SGK2Q9HBY8 427 aa15.04■□□□□ -0
SDC1-204ENST00000429035 FBXL12Q9NXK8 326 aa15.04■□□□□ -0
SDC1-204ENST00000429035 COX16Q9P0S2 106 aa15.04■□□□□ -0
SDC1-204ENST00000429035 XPO7Q9UIA9 1087 aaKnown RBP15.04■□□□□ -0
SDC1-204ENST00000429035 LHX6Q9UPM6 363 aa15.04■□□□□ -0
SDC1-204ENST00000429035 TLR6Q9Y2C9 796 aa15.04■□□□□ -0
SDC1-204ENST00000429035 ANKRD6Q9Y2G4 727 aa15.04■□□□□ -0
SDC1-204ENST00000429035 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.04■□□□□ -0
SDC1-204ENST00000429035 WDFY3Q8IZQ1 3526 aa15.04■□□□□ -0
SDC1-204ENST00000429035 GOLGA4Q13439 2230 aaKnown RBP15.04■□□□□ -0
SDC1-204ENST00000429035 SPEGQ15772 3267 aa15.03■□□□□ -0
SDC1-204ENST00000429035 MID1O15344 667 aa15.03■□□□□ -0
SDC1-204ENST00000429035 CBFA2T3O75081 653 aa15.03■□□□□ -0
SDC1-204ENST00000429035 RNASEH2AO75792 299 aaKnown RBP15.03■□□□□ -0
SDC1-204ENST00000429035 LETM1O95202 739 aaPredicted RBP15.03■□□□□ -0
SDC1-204ENST00000429035 LUC7L3O95232 432 aaKnown RBP15.03■□□□□ -0
SDC1-204ENST00000429035 ASLP04424 464 aa15.03■□□□□ -0
SDC1-204ENST00000429035 ZNF883P0CG24 379 aa15.03■□□□□ -0
SDC1-204ENST00000429035 CTSOP43234 321 aaPredicted RBP15.03■□□□□ -0
SDC1-204ENST00000429035 ACADSBP45954 432 aa15.03■□□□□ -0
SDC1-204ENST00000429035 GRIA4P48058 902 aa15.03■□□□□ -0
SDC1-204ENST00000429035 C21orf59P57076 290 aa15.03■□□□□ -0
SDC1-204ENST00000429035 SUZ12Q15022 739 aaKnown RBP15.03■□□□□ -0
SDC1-204ENST00000429035 DCAF6Q58WW2 860 aa15.03■□□□□ -0
SDC1-204ENST00000429035 MS4A13Q5J8X5 152 aa15.03■□□□□ -0
SDC1-204ENST00000429035 PITRM1Q5JRX3 1037 aa15.03■□□□□ -0
SDC1-204ENST00000429035 KIAA0895LQ68EN5 471 aa15.03■□□□□ -0
SDC1-204ENST00000429035 SLCO6A1Q86UG4 719 aa15.03■□□□□ -0
SDC1-204ENST00000429035 MMAAQ8IVH4 418 aaKnown RBP15.03■□□□□ -0
SDC1-204ENST00000429035 EHBP1Q8NDI1 1231 aa15.03■□□□□ -0
SDC1-204ENST00000429035 FIBINQ8TAL6 211 aa15.03■□□□□ -0
SDC1-204ENST00000429035 LMO3Q8TAP4 145 aa15.03■□□□□ -0
SDC1-204ENST00000429035 SLC6A18Q96N87 628 aa15.03■□□□□ -0
SDC1-204ENST00000429035 OMDQ99983 421 aa15.03■□□□□ -0
SDC1-204ENST00000429035 FAM204AQ9H8W3 233 aa15.03■□□□□ -0
SDC1-204ENST00000429035 SERGEFQ9UGK8 458 aa15.03■□□□□ -0
SDC1-204ENST00000429035 INTS6Q9UL03 887 aaKnown RBP15.03■□□□□ -0
SDC1-204ENST00000429035 BTBD3Q9Y2F9 522 aa15.03■□□□□ -0
SDC1-204ENST00000429035 TTC34A8MYJ7 566 aa15.02■□□□□ -0
SDC1-204ENST00000429035 E5RJQ4 531 aa15.02■□□□□ -0
SDC1-204ENST00000429035 F5H5T6 163 aa15.02■□□□□ -0
SDC1-204ENST00000429035 H0Y8X5 98 aa15.02■□□□□ -0
SDC1-204ENST00000429035 PMM2O15305 246 aa15.02■□□□□ -0
SDC1-204ENST00000429035 MED7O43513 233 aa15.02■□□□□ -0
SDC1-204ENST00000429035 FYNP06241 537 aa15.02■□□□□ -0
SDC1-204ENST00000429035 ATXN1LP0C7T5 689 aaKnown RBP15.02■□□□□ -0
SDC1-204ENST00000429035 TACR2P21452 398 aa15.02■□□□□ -0
SDC1-204ENST00000429035 CD27P26842 260 aa15.02■□□□□ -0
SDC1-204ENST00000429035 GNA15P30679 374 aa15.02■□□□□ -0
SDC1-204ENST00000429035 USP8P40818 1118 aa15.02■□□□□ -0
SDC1-204ENST00000429035 NNTQ13423 1086 aa15.02■□□□□ -0
SDC1-204ENST00000429035 CST6Q15828 149 aa15.02■□□□□ -0
SDC1-204ENST00000429035 HNRNPA1L2Q32P51 320 aaKnown RBP15.02■□□□□ -0
SDC1-204ENST00000429035 ZC3H12AQ5D1E8 599 aaKnown RBP15.02■□□□□ -0
SDC1-204ENST00000429035 FSCBQ5H9T9 825 aa15.02■□□□□ -0
SDC1-204ENST00000429035 NCEH1Q6PIU2 408 aa15.02■□□□□ -0
SDC1-204ENST00000429035 CIR1Q86X95 450 aaPredicted RBP15.02■□□□□ -0
SDC1-204ENST00000429035 TRIM59Q8IWR1 403 aa15.02■□□□□ -0
SDC1-204ENST00000429035 C1orf216Q8TAB5 229 aa15.02■□□□□ -0
SDC1-204ENST00000429035 MYO19Q96H55 970 aa15.02■□□□□ -0
SDC1-204ENST00000429035 CDC6Q99741 560 aa15.02■□□□□ -0
SDC1-204ENST00000429035 TRIM62Q9BVG3 475 aa15.02■□□□□ -0
SDC1-204ENST00000429035 SRRTQ9BXP5 876 aaKnown RBP15.02■□□□□ -0
SDC1-204ENST00000429035 IRX2Q9BZI1 471 aaPredicted RBP15.02■□□□□ -0
SDC1-204ENST00000429035 RSPH9Q9H1X1 276 aaPredicted RBP15.02■□□□□ -0
SDC1-204ENST00000429035 CCDC86Q9H6F5 360 aaKnown RBP15.02■□□□□ -0
SDC1-204ENST00000429035 UBE2TQ9NPD8 197 aaPredicted RBP15.02■□□□□ -0
SDC1-204ENST00000429035 AASDHPPTQ9NRN7 309 aa15.02■□□□□ -0
SDC1-204ENST00000429035 ERVW-1Q9UQF0 538 aa15.02■□□□□ -0
SDC1-204ENST00000429035 PKD1L2Q7Z442 2459 aa15.02□□□□□ -0.01
SDC1-204ENST00000429035 PPP1R3GB7ZBB8 358 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 GNA14O95837 355 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 PDGFRAP16234 1089 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 BMP6P22004 513 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 GPD2P43304 727 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 STK19P49842 368 aaPredicted RBP15.01□□□□□ -0.01
SDC1-204ENST00000429035 SFSWAPQ12872 951 aaKnown RBP15.01□□□□□ -0.01
SDC1-204ENST00000429035 MORC3Q14149 939 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 ARHGAP44Q17R89 818 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 INAVAQ3KP66 663 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms