RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 TTC39BQ5VTQ0 682 aaPredicted RBP12.88□□□□□ -0.35
SKA1-203ENST00000417656 DAB2IPQ5VWQ8 1189 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 EGFLAMQ63HQ2 1017 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 SCYL2Q6P3W7 929 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 H2AFVQ71UI9 128 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 CCAR2Q8N163 923 aaKnown RBP12.88□□□□□ -0.35
SKA1-203ENST00000417656 SPEM1Q8N4L4 309 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 CCDC33Q8N5R6 958 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 ALLCQ8N6M5 410 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.88□□□□□ -0.35
SKA1-203ENST00000417656 ZNF564Q8TBZ8 553 aaPredicted RBP12.88□□□□□ -0.35
SKA1-203ENST00000417656 CTNNBL1Q8WYA6 563 aaPredicted RBP12.88□□□□□ -0.35
SKA1-203ENST00000417656 NTAN1Q96AB6 310 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 ACDQ96AP0 544 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 BTBD6Q96KE9 485 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 HAPLN3Q96S86 360 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 PRMT8Q9NR22 394 aaPredicted RBP12.88□□□□□ -0.35
SKA1-203ENST00000417656 ANAPC7Q9UJX3 599 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 GGA2Q9UJY4 613 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 HCN2Q9UL51 889 aa12.88□□□□□ -0.35
SKA1-203ENST00000417656 DOCK4Q8N1I0 1966 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 A0A0A0MRY4 1105 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 CHURC1-FNTBB4DL54 471 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 E9PAM4 449 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 H0Y626 953 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 CNTN5O94779 1100 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 KLF8O95600 359 aaPredicted RBP12.87□□□□□ -0.35
SKA1-203ENST00000417656 TMEM253P0C7T8 217 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 COL9A1P20849 921 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 HOXC13P31276 330 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 CCR3P51677 355 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 SCAPQ12770 1279 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 TCF15Q12870 199 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 FUT11Q495W5 492 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 C5orf22Q49AR2 442 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 ALFQ53S48 1182 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 FSCBQ5H9T9 825 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 ARTNQ5T4W7 220 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 TMEM215Q68D42 235 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 CXorf57Q6NSI4 855 aaKnown RBP12.87□□□□□ -0.35
SKA1-203ENST00000417656 TSSK4Q6SA08 328 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 NUDT18Q6ZVK8 323 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 CHST9Q7L1S5 443 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 SLFN11Q7Z7L1 901 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 CCDC117Q8IWD4 279 aaPredicted RBP12.87□□□□□ -0.35
SKA1-203ENST00000417656 MAML2Q8IZL2 1156 aaPredicted RBP12.87□□□□□ -0.35
SKA1-203ENST00000417656 AHI1Q8N157 1196 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 ARFGAP1Q8N6T3 406 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 ZNF513Q8N8E2 541 aaPredicted RBP12.87□□□□□ -0.35
SKA1-203ENST00000417656 IL17RCQ8NAC3 791 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 TXNDC5Q8NBS9 432 aaKnown RBP12.87□□□□□ -0.35
SKA1-203ENST00000417656 CCDC26Q8TAB7 109 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 WFIKKN2Q8TEU8 576 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 SORCS1Q8WY21 1168 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 PEBP4Q96S96 227 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 MAGEB5Q9BZ81 275 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 CIPCQ9C0C6 399 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 GRPEL1Q9HAV7 217 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 GPATCH2LQ9NWQ4 482 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 CTTNBP2NLQ9P2B4 639 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 IMPACTQ9P2X3 320 aa12.87□□□□□ -0.35
SKA1-203ENST00000417656 IGLV3-10A0A075B6K4 115 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 GOLGA6L3A6NEY3 463 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 FAM72CH0Y354 149 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 SRGAP2O75044 1071 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 ATG13O75143 517 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 LRCH4O75427 683 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 RNF8O76064 485 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 MIPP30301 263 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 WASP42768 502 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 NUMBP49757 651 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 MRPS21P82921 87 aaKnown RBP12.86□□□□□ -0.35
SKA1-203ENST00000417656 DMC1Q14565 340 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 EIF4HQ15056 248 aaKnown RBP12.86□□□□□ -0.35
SKA1-203ENST00000417656 EFHC2Q5JST6 749 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 FAM72AQ5TYM5 149 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 MANEALQ5VSG8 457 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 FAM72DQ6L9T8 149 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 LRRC31Q6UY01 552 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 TFAP2DQ7Z6R9 452 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 FAM72BQ86X60 149 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 PYROXD2Q8N2H3 581 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 ZNF557Q8N988 423 aaPredicted RBP12.86□□□□□ -0.35
SKA1-203ENST00000417656 FIBINQ8TAL6 211 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 LMLNQ96KR4 655 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 C1orf74Q96LT6 269 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 HHIPQ96QV1 700 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 ACOX2Q99424 681 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 PRRX2Q99811 253 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 SNRNP25Q9BV90 132 aaKnown RBP12.86□□□□□ -0.35
SKA1-203ENST00000417656 MPP6Q9NZW5 540 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 PCSK1NQ9UHG2 260 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 FZD10Q9ULW2 581 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 MMP17Q9ULZ9 603 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 NEU3Q9UQ49 428 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 CACNA1IQ9P0X4 2223 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 NYNRINQ9P2P1 1898 aaKnown RBP12.86□□□□□ -0.35
SKA1-203ENST00000417656 MUC6Q6W4X9 2439 aa12.86□□□□□ -0.35
SKA1-203ENST00000417656 GOLGA6L6A8MZA4 724 aa12.85□□□□□ -0.35
SKA1-203ENST00000417656 H0Y858 1186 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms