RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 MT-ND3P03897 115 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 SKIP12755 728 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 CYP2F1P24903 491 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 ALDH3A1P30838 453 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 ALDH7A1P49419 539 aaKnown RBP15.27■□□□□ 0.03
USP4-203ENST00000415188 RAB27AP51159 221 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 AFF1P51825 1210 aaKnown RBP15.27■□□□□ 0.03
USP4-203ENST00000415188 NCALDP61601 193 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 RIPK1Q13546 671 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 KCNC3Q14003 757 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 SETDB1Q15047 1291 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 SNCBQ16143 134 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 SWT1Q5T5J6 900 aaKnown RBP15.27■□□□□ 0.03
USP4-203ENST00000415188 AGMOQ6ZNB7 445 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 BANPQ8N9N5 519 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 APPL2Q8NEU8 664 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 BCL7CQ8WUZ0 217 aaPredicted RBP15.27■□□□□ 0.03
USP4-203ENST00000415188 KBTBD7Q8WVZ9 684 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 QKIQ96PU8 341 aaKnown RBP eCLIP15.27■□□□□ 0.03
USP4-203ENST00000415188 APOL5Q9BWW9 433 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 VPS11Q9H270 941 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 NXF3Q9H4D5 531 aaKnown RBP15.27■□□□□ 0.03
USP4-203ENST00000415188 RAB6BQ9NRW1 208 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 ETNK2Q9NVF9 386 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.27■□□□□ 0.03
USP4-203ENST00000415188 ZNF180Q9UJW8 692 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 PHTF1Q9UMS5 762 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 CHMP2BQ9UQN3 213 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 A0A1W2PPM1 405 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 XPO1O14980 1071 aaKnown RBP15.26■□□□□ 0.03
USP4-203ENST00000415188 DAB1O75553 588 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 GABBR2O75899 941 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 DCTN3O75935 186 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 INHBAP08476 426 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 KRT4P19013 534 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 L1CAMP32004 1257 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 SLC8A3P57103 927 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 YWHAGP61981 247 aaKnown RBP eCLIP15.26■□□□□ 0.03
USP4-203ENST00000415188 YWHAZP63104 245 aaKnown RBP15.26■□□□□ 0.03
USP4-203ENST00000415188 SLC18A2Q05940 514 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 SLC1A5Q15758 541 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 FAM133BQ5BKY9 247 aaKnown RBP15.26■□□□□ 0.03
USP4-203ENST00000415188 LGSNQ5TDP6 509 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 LVRNQ6Q4G3 990 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 CHSY1Q86X52 802 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 ZNF280BQ86YH2 543 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 RNF135Q8IUD6 432 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 SCUBE3Q8IX30 993 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 TMEM169Q96HH4 297 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 ECT2Q9H8V3 914 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 KIF9Q9HAQ2 790 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 XAB2Q9HCS7 855 aaKnown RBP15.26■□□□□ 0.03
USP4-203ENST00000415188 TXLNGQ9NUQ3 528 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 GPATCH2LQ9NWQ4 482 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 DNAJB4Q9UDY4 337 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 MUTYHQ9UIF7 546 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 AP4E1Q9UPM8 1137 aa15.26■□□□□ 0.03
USP4-203ENST00000415188 SF3B1O75533 1304 aaKnown RBP eCLIP15.26■□□□□ 0.03
USP4-203ENST00000415188 TCRBV9S1A1TA0A576 114 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 C2orf71A6NGG8 1288 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 HUS1O60921 280 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 GALTP07902 379 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 NQO1P15559 274 aaKnown RBP15.25■□□□□ 0.03
USP4-203ENST00000415188 PRKCHP24723 683 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 RBL1P28749 1068 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 LRPAP1P30533 357 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 CA8P35219 290 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 SLC11A1P49279 550 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 ELF3P78545 371 aaPredicted RBP15.25■□□□□ 0.03
USP4-203ENST00000415188 CDK16Q00536 496 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 EFTUD2Q15029 972 aaKnown RBP eCLIP15.25■□□□□ 0.03
USP4-203ENST00000415188 CA9Q16790 459 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 RAB6CQ53S08 254 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 FYB2Q5VWT5 728 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 ANKRD54Q6NXT1 300 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 SYCE2Q6PIF2 218 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 TMEM184AQ6ZMB5 413 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 MRPL10Q7Z7H8 261 aaKnown RBP15.25■□□□□ 0.03
USP4-203ENST00000415188 SLC26A11Q86WA9 606 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 HACE1Q8IYU2 909 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 VPS52Q8N1B4 723 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 MRPL43Q8N983 215 aaKnown RBP15.25■□□□□ 0.03
USP4-203ENST00000415188 AUTS2Q8WXX7 1259 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 SUSD6Q92537 303 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 PGBD4Q96DM1 585 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 APOPT1Q96IL0 206 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 HNRNPABQ99729 332 aaKnown RBP15.25■□□□□ 0.03
USP4-203ENST00000415188 RAB6CQ9H0N0 254 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 POPDC2Q9HBU9 364 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 CDH22Q9UJ99 828 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 HEY1Q9Y5J3 304 aa15.25■□□□□ 0.03
USP4-203ENST00000415188 PRR33A8MZF0 331 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 CLASP2O75122 1294 aaKnown RBP15.24■□□□□ 0.03
USP4-203ENST00000415188 DDHD2O94830 711 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 IL1BP01584 269 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 CCNB1P14635 433 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 ADORA2BP29275 332 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 FDFT1P37268 417 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 MATKP42679 507 aa15.24■□□□□ 0.03
USP4-203ENST00000415188 MAGEA3P43357 314 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms