RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 BZW1Q7L1Q6 419 aaKnown RBP6.85□□□□□ -1.31
VPS41-204ENST00000413141 C14orf80Q86SX3 495 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 PRUNE1Q86TP1 453 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 RBM23Q86U06 439 aaKnown RBP6.85□□□□□ -1.31
VPS41-204ENST00000413141 NLRP14Q86W24 1093 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 CHSY1Q86X52 802 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 DDX42Q86XP3 938 aaKnown RBP eCLIP6.85□□□□□ -1.31
VPS41-204ENST00000413141 UNC45BQ8IWX7 931 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 CCDC33Q8N5R6 958 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 ARL14EPQ8N8R7 260 aaPredicted RBP6.85□□□□□ -1.31
VPS41-204ENST00000413141 CCDC89Q8N998 374 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 LEMD2Q8NC56 503 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 SHKBP1Q8TBC3 707 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 CCHCR1Q8TD31 782 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 AENQ8WTP8 325 aaKnown RBP6.85□□□□□ -1.31
VPS41-204ENST00000413141 HNRNPLLQ8WVV9 542 aaKnown RBP6.85□□□□□ -1.31
VPS41-204ENST00000413141 RSAD2Q8WXG1 361 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 IFT81Q8WYA0 676 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 ZNF707Q96C28 371 aaPredicted RBP6.85□□□□□ -1.31
VPS41-204ENST00000413141 RTP4Q96DX8 246 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 SNF8Q96H20 258 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 SLC22A12Q96S37 553 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 CDCA3Q99618 268 aaPredicted RBP6.85□□□□□ -1.31
VPS41-204ENST00000413141 ZYG11BQ9C0D3 744 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 KLC2Q9H0B6 622 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 RNF38Q9H0F5 515 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 NEUROG2Q9H2A3 272 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 PRO3102Q9H379 93 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 ATXN3LQ9H3M9 355 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 CATSPERBQ9H7T0 1116 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 C10orf88Q9H8K7 445 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 GRHL1Q9NZI5 618 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 DNMT3BQ9UBC3 853 aaKnown RBP6.85□□□□□ -1.31
VPS41-204ENST00000413141 PPARGC1AQ9UBK2 798 aaKnown RBP6.85□□□□□ -1.31
VPS41-204ENST00000413141 ASIC3Q9UHC3 531 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 SLC12A6Q9UHW9 1150 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 VANGL2Q9ULK5 521 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 NFU1Q9UMS0 254 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 SNX24Q9Y343 169 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 RAD54BQ9Y620 910 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 CPQQ9Y646 472 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 CDH23Q9H251 3354 aa6.85□□□□□ -1.31
VPS41-204ENST00000413141 TRAV19A0A0A6YYK7 116 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 GOLGA6L7A0A1B0GV03 622 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 DRGXA6NNA5 263 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 F5H5T6 163 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 TP73O15350 636 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 NCAM2O15394 837 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 KCNN4O15554 427 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 ACSL4O60488 711 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 GREM1O60565 184 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 MOSPD3O75425 235 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 SEC31AO94979 1220 aaKnown RBP6.84□□□□□ -1.31
VPS41-204ENST00000413141 PAPLNO95428 1278 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 LATS1O95835 1130 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 IFNB1P01574 187 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 KLKB1P03952 638 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 CKMP06732 381 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 RHOP08100 348 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 ZSCAN5DPP0CG00 497 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 ETS1P14921 441 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 RHOQP17081 205 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 GJA1P17302 382 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 PTPN2P17706 415 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 HDCP19113 662 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 DDX6P26196 483 aaKnown RBP eCLIP6.84□□□□□ -1.31
VPS41-204ENST00000413141 IVDP26440 423 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 RBL1P28749 1068 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 SLC6A4P31645 630 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 SLC11A2P49281 568 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 VPS41P49754 854 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 NRLP54845 237 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 DRG2P55039 364 aaKnown RBP6.84□□□□□ -1.31
VPS41-204ENST00000413141 SLC7A9P82251 487 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 ZXDBP98169 803 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 GALNT2Q10471 571 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 KCNC3Q14003 757 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 HLTFQ14527 1009 aaKnown RBP eCLIP6.84□□□□□ -1.31
VPS41-204ENST00000413141 PDK1Q15118 436 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 SLC5A9Q2M3M2 681 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 P3H1Q32P28 736 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 C5orf22Q49AR2 442 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 ALFQ53S48 1182 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 PRSS36Q5K4E3 855 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 BEND6Q5SZJ8 279 aaPredicted RBP6.84□□□□□ -1.31
VPS41-204ENST00000413141 ZNF697Q5TEC3 545 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 AFMIDQ63HM1 303 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 HEATR6Q6AI08 1181 aaKnown RBP6.84□□□□□ -1.31
VPS41-204ENST00000413141 FBXL22Q6P050 247 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 EMBQ6PCB8 327 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 LRRC31Q6UY01 552 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 DENND1CQ8IV53 801 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 ARHGAP12Q8IWW6 846 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 TP53INP2Q8IXH6 220 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 RTL3Q8N8U3 475 aaKnown RBP6.84□□□□□ -1.31
VPS41-204ENST00000413141 MAB21L3Q8N8X9 362 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 FAM71DQ8N9W8 422 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 NETO2Q8NC67 525 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 VN1R2Q8NFZ6 395 aa6.84□□□□□ -1.31
VPS41-204ENST00000413141 ADAMTS19Q8TE59 1207 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms