RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 SHCBP1Q8NEM2 672 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 EME1Q96AY2 570 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 RBPJLQ9UBG7 517 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 LRCH1Q9Y2L9 728 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 BDNFP23560 247 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 TEDDM1Q5T9Z0 273 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 AGAP9Q5VTM2 703 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 IL31Q6EBC2 164 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 SERAC1Q96JX3 654 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 PCYT2Q99447 389 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 SEPT5Q99719 369 aaPredicted RBP18.97■□□□□ 0.63
USP48-204ENST00000400301 ZNF112Q9UJU3 913 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 LAMB1P07942 1786 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 TRPC5OSA6NMA1 111 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 SH3BP5O60239 455 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 SUPT7LO94864 414 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 CSHL1Q14406 222 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 CA9Q16790 459 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 MGAT5BQ3V5L5 792 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 SH3D19Q5HYK7 790 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 BRD8Q9H0E9 1235 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 MORF4L1Q9UBU8 362 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 AURKCQ9UQB9 309 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 CLUHO75153 1309 aa18.97■□□□□ 0.63
USP48-204ENST00000400301 FZD9O00144 591 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 GNGT2O14610 69 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 C10orf120Q5SQS8 335 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 TAF2Q6P1X5 1199 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 BANPQ8N9N5 519 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 MAGEC3Q8TD91 643 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 RPRD1AQ96P16 312 aaPredicted RBP18.96■□□□□ 0.63
USP48-204ENST00000400301 EFCAB1Q9HAE3 211 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 SSU72Q9NP77 194 aaKnown RBP18.96■□□□□ 0.63
USP48-204ENST00000400301 SMIM28A0A1B0GU29 152 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 ANGPT2O15123 496 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 CDK7P50613 346 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 MRPS5P82675 430 aaKnown RBP18.96■□□□□ 0.63
USP48-204ENST00000400301 SLC25A11Q02978 314 aaKnown RBP18.96■□□□□ 0.63
USP48-204ENST00000400301 TCHHL1Q5QJ38 904 aaPredicted RBP18.96■□□□□ 0.63
USP48-204ENST00000400301 OVOS1Q6IE37 1185 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 PACS1Q6VY07 963 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 SLC26A9Q7LBE3 791 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 ARCQ7LC44 396 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 STRADAQ7RTN6 431 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 ACMSDQ8TDX5 336 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 EIF2AQ9BY44 585 aaKnown RBP18.96■□□□□ 0.63
USP48-204ENST00000400301 MYH4Q9Y623 1939 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 MDM4O15151 490 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 GSTA4O15217 222 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 LYPLA1O75608 230 aaPredicted RBP18.96■□□□□ 0.63
USP48-204ENST00000400301 DDHD2O94830 711 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 CYLC2Q14093 348 aaPredicted RBP18.96■□□□□ 0.63
USP48-204ENST00000400301 CYTH1Q15438 398 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 TARBP2Q15633 366 aaKnown RBP18.96■□□□□ 0.63
USP48-204ENST00000400301 MSS51Q4VC12 460 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 SLC30A9Q6PML9 568 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 TAS2R42Q7RTR8 314 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 GPR142Q7Z601 462 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 SYBUQ9NX95 663 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 NCKIPSDQ9NZQ3 722 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 NUDT5Q9UKK9 219 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 FAF1Q9UNN5 650 aaPredicted RBP18.96■□□□□ 0.63
USP48-204ENST00000400301 F8W8V4 182 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 BPGMP07738 259 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 IVDP26440 423 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 CCR1P32246 355 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 ATXN1P54253 815 aaKnown RBP18.96■□□□□ 0.63
USP48-204ENST00000400301 GPX6P59796 221 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 SLC25A3Q00325 362 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 SLC25A52Q3SY17 297 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 DUSP28Q4G0W2 176 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 USP50Q70EL3 339 aaPredicted RBP18.96■□□□□ 0.63
USP48-204ENST00000400301 BLOC1S5Q8TDH9 187 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 SIKE1Q9BRV8 207 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 DPEP3Q9H4B8 488 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 NT5MQ9NPB1 228 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 DTNAQ9Y4J8 743 aa18.96■□□□□ 0.63
USP48-204ENST00000400301 NFKB1P19838 968 aa18.95■□□□□ 0.62
USP48-204ENST00000400301 TIGD7Q6NT04 549 aaPredicted RBP18.95■□□□□ 0.62
USP48-204ENST00000400301 BNC2Q6ZN30 1099 aaPredicted RBP18.95■□□□□ 0.62
USP48-204ENST00000400301 CMC1Q7Z7K0 106 aa18.95■□□□□ 0.62
USP48-204ENST00000400301 KCTD15Q96SI1 283 aaPredicted RBP18.95■□□□□ 0.62
USP48-204ENST00000400301 PRDM16Q9HAZ2 1276 aa18.95■□□□□ 0.62
USP48-204ENST00000400301 NDUFS3O75489 264 aa18.95■□□□□ 0.62
USP48-204ENST00000400301 UBAP2LQ14157 1087 aaKnown RBP18.95■□□□□ 0.62
USP48-204ENST00000400301 IFNEQ86WN2 208 aa18.95■□□□□ 0.62
USP48-204ENST00000400301 TNS4Q8IZW8 715 aa18.95■□□□□ 0.62
USP48-204ENST00000400301 VAT1Q99536 393 aa18.95■□□□□ 0.62
USP48-204ENST00000400301 ZFYVE28Q9HCC9 887 aa18.95■□□□□ 0.62
USP48-204ENST00000400301 SIX4Q9UIU6 781 aa18.95■□□□□ 0.62
USP48-204ENST00000400301 BAG5Q9UL15 447 aa18.95■□□□□ 0.62
USP48-204ENST00000400301 DERAQ9Y315 318 aa18.95■□□□□ 0.62
USP48-204ENST00000400301 TNRC6CQ9HCJ0 1690 aaKnown RBP18.95■□□□□ 0.62
USP48-204ENST00000400301 DDX60LQ5H9U9 1706 aaKnown RBP18.95■□□□□ 0.62
USP48-204ENST00000400301 XPO1O14980 1071 aaKnown RBP18.95■□□□□ 0.62
USP48-204ENST00000400301 DARSP14868 501 aaKnown RBP18.95■□□□□ 0.62
USP48-204ENST00000400301 EEF1B2P24534 225 aaKnown RBP18.95■□□□□ 0.62
USP48-204ENST00000400301 PTPN7P35236 360 aa18.95■□□□□ 0.62
USP48-204ENST00000400301 ABCE1P61221 599 aaKnown RBP18.95■□□□□ 0.62
USP48-204ENST00000400301 CDCA2Q69YH5 1023 aaPredicted RBP18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms