RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 MS4A13Q5J8X5 152 aa14.65□□□□□ -0.06
SKA1-202ENST00000398452 STXBP5Q5T5C0 1151 aa14.65□□□□□ -0.06
SKA1-202ENST00000398452 ADGRF1Q5T601 910 aa14.65□□□□□ -0.06
SKA1-202ENST00000398452 SYCE2Q6PIF2 218 aa14.65□□□□□ -0.06
SKA1-202ENST00000398452 LGI2Q8N0V4 545 aa14.65□□□□□ -0.06
SKA1-202ENST00000398452 CELF5Q8N6W0 485 aaKnown RBP14.65□□□□□ -0.06
SKA1-202ENST00000398452 CCDC26Q8TAB7 109 aa14.65□□□□□ -0.06
SKA1-202ENST00000398452 SH3RF2Q8TEC5 729 aa14.65□□□□□ -0.06
SKA1-202ENST00000398452 MAGOHBQ96A72 148 aaKnown RBP14.65□□□□□ -0.06
SKA1-202ENST00000398452 HAUS1Q96CS2 278 aa14.65□□□□□ -0.06
SKA1-202ENST00000398452 FAF2Q96CS3 445 aa14.65□□□□□ -0.06
SKA1-202ENST00000398452 SLC22A12Q96S37 553 aa14.65□□□□□ -0.06
SKA1-202ENST00000398452 GDE1Q9NZC3 331 aa14.65□□□□□ -0.06
SKA1-202ENST00000398452 SMARCAL1Q9NZC9 954 aa14.65□□□□□ -0.06
SKA1-202ENST00000398452 TBC1D14Q9P2M4 693 aa14.65□□□□□ -0.06
SKA1-202ENST00000398452 VANGL2Q9ULK5 521 aa14.65□□□□□ -0.06
SKA1-202ENST00000398452 E2F8A0AVK6 867 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 PHF2O75151 1096 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 MOSPD3O75425 235 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 ZNF189O75820 626 aaPredicted RBP14.64□□□□□ -0.07
SKA1-202ENST00000398452 ERCC2P18074 760 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 AMPD1P23109 780 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 CHRNA3P32297 505 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 GGCXP38435 758 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 NR2C2P49116 596 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 C2orf54Q08AI8 447 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 TAZQ16635 292 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 PIK3R6Q5UE93 754 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 TTC39BQ5VTQ0 682 aaPredicted RBP14.64□□□□□ -0.07
SKA1-202ENST00000398452 C1orf228Q6PIY5 440 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 ARID3BQ8IVW6 561 aaPredicted RBP14.64□□□□□ -0.07
SKA1-202ENST00000398452 KLHL7Q8IXQ5 586 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 CCDC105Q8IYK2 499 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 LZTR1Q8N653 840 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 PCDH19Q8TAB3 1148 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 ITFG1Q8TB96 612 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 ZSCAN18Q8TBC5 510 aaPredicted RBP14.64□□□□□ -0.07
SKA1-202ENST00000398452 GRK7Q8WTQ7 553 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 TSC1Q92574 1164 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 E2F7Q96AV8 911 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 CCDC114Q96M63 670 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 RETREG1Q9H6L5 497 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 ANLNQ9NQW6 1124 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 ARHGEF4Q9NR80 690 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 PPARGC1AQ9UBK2 798 aaKnown RBP14.64□□□□□ -0.07
SKA1-202ENST00000398452 CD207Q9UJ71 328 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 AGO1Q9UL18 857 aaKnown RBP14.64□□□□□ -0.07
SKA1-202ENST00000398452 HEY1Q9Y5J3 304 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 SNX10Q9Y5X0 201 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 MUC3AQ02505 3323 aa14.64□□□□□ -0.07
SKA1-202ENST00000398452 PDE2AO00408 941 aaPredicted RBP14.63□□□□□ -0.07
SKA1-202ENST00000398452 TBX10O75333 385 aa14.63□□□□□ -0.07
SKA1-202ENST00000398452 MX2P20592 715 aa14.63□□□□□ -0.07
SKA1-202ENST00000398452 SEMA3BQ13214 749 aa14.63□□□□□ -0.07
SKA1-202ENST00000398452 CCNG2Q16589 344 aa14.63□□□□□ -0.07
SKA1-202ENST00000398452 SLC9A4Q6AI14 798 aa14.63□□□□□ -0.07
SKA1-202ENST00000398452 FBXL22Q6P050 247 aa14.63□□□□□ -0.07
SKA1-202ENST00000398452 HTR3DQ70Z44 454 aa14.63□□□□□ -0.07
SKA1-202ENST00000398452 GSTA5Q7RTV2 222 aa14.63□□□□□ -0.07
SKA1-202ENST00000398452 ZNF572Q7Z3I7 529 aaPredicted RBP14.63□□□□□ -0.07
SKA1-202ENST00000398452 MAATS1Q7Z4T9 603 aa14.63□□□□□ -0.07
SKA1-202ENST00000398452 YAF2Q8IY57 180 aa14.63□□□□□ -0.07
SKA1-202ENST00000398452 GJD3Q8N144 294 aa14.63□□□□□ -0.07
SKA1-202ENST00000398452 UBXN4Q92575 508 aa14.63□□□□□ -0.07
SKA1-202ENST00000398452 FGF13Q92913 245 aa14.63□□□□□ -0.07
SKA1-202ENST00000398452 SMARCD2Q92925 531 aa14.63□□□□□ -0.07
SKA1-202ENST00000398452 USP13Q92995 863 aaPredicted RBP14.63□□□□□ -0.07
SKA1-202ENST00000398452 C1QTNF1Q9BXJ1 281 aa14.63□□□□□ -0.07
SKA1-202ENST00000398452 SMG9Q9H0W8 520 aaKnown RBP14.63□□□□□ -0.07
SKA1-202ENST00000398452 THG1LQ9NWX6 298 aaKnown RBP14.63□□□□□ -0.07
SKA1-202ENST00000398452 CLEC1BQ9P126 229 aa14.63□□□□□ -0.07
SKA1-202ENST00000398452 XPO7Q9UIA9 1087 aaKnown RBP14.63□□□□□ -0.07
SKA1-202ENST00000398452 CDH7Q9ULB5 785 aa14.63□□□□□ -0.07
SKA1-202ENST00000398452 RAD54BQ9Y620 910 aa14.63□□□□□ -0.07
SKA1-202ENST00000398452 ZFP37Q9Y6Q3 630 aaPredicted RBP14.63□□□□□ -0.07
SKA1-202ENST00000398452 GRXCR2A6NFK2 248 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 EFCAB8A8MWE9 144 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 FAM72CH0Y354 149 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 H7C0C1 242 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 PPP1R12AO14974 1030 aaPredicted RBP14.62□□□□□ -0.07
SKA1-202ENST00000398452 NCAM2O15394 837 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 GAS8O95995 478 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 RHOQP17081 205 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 IL4RP24394 825 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 WEE1P30291 646 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 ACTN2P35609 894 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 ATP5OP48047 213 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 IFNAR2P48551 515 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 FNTAP49354 379 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 EIF3EP60228 445 aaKnown RBP14.62□□□□□ -0.07
SKA1-202ENST00000398452 OTUD4Q01804 1114 aaKnown RBP14.62□□□□□ -0.07
SKA1-202ENST00000398452 DLX2Q07687 328 aaPredicted RBP14.62□□□□□ -0.07
SKA1-202ENST00000398452 KLF1Q13351 362 aaPredicted RBP14.62□□□□□ -0.07
SKA1-202ENST00000398452 DPYSQ14117 519 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 CBX2Q14781 532 aaPredicted RBP14.62□□□□□ -0.07
SKA1-202ENST00000398452 PDK1Q15118 436 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 CTC1Q2NKJ3 1217 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 TEX35Q5T0J7 233 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 FAM72AQ5TYM5 149 aa14.62□□□□□ -0.07
SKA1-202ENST00000398452 FAM72DQ6L9T8 149 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms