RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 NAPRTQ6XQN6 538 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 FAM131BQ86XD5 332 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 IFNLR1Q8IU57 520 aaPredicted RBP13.04□□□□□ -0.32
SHMT1-205ENST00000395684 LINC01465Q8N7H1 131 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 ZMAT2Q96NC0 199 aaKnown RBP13.04□□□□□ -0.32
SHMT1-205ENST00000395684 FCRL3Q96P31 734 aaPredicted RBP13.04□□□□□ -0.32
SHMT1-205ENST00000395684 KLHL4Q9C0H6 718 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 COG4Q9H9E3 785 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 TMPRSS4Q9NRS4 437 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 ERAP1Q9NZ08 941 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 A0A0G2JMZ2 1700 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 LRRC37A2A6NM11 1700 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 PTPRFP10586 1907 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 TSPAN1O60635 241 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 UQCRBP14927 111 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 CPA3P15088 417 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 VCLP18206 1134 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 PSMB4P28070 264 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 DEUP1Q05D60 604 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 CUL3Q13618 768 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 GJC2Q5T442 439 aaPredicted RBP13.03□□□□□ -0.32
SHMT1-205ENST00000395684 FBXW8Q8N3Y1 598 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 ZNF781Q8N8C0 355 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 OR6B3Q8NGW1 331 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 ATXN7L3BQ96GX2 97 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 TXNRD2Q9NNW7 524 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 SNX15Q9NRS6 342 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 RNF19AQ9NV58 838 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 SCN1AP35498 2009 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 HACD1B0YJ81 288 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 H3BNX3 289 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 FZD9O00144 591 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 CCDC130P13994 396 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 RAG1P15918 1043 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 ADORA2BP29275 332 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 GRIA2P42262 883 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 TBL3Q12788 808 aaKnown RBP13.03□□□□□ -0.32
SHMT1-205ENST00000395684 MED21Q13503 144 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 Q3C1V9 767 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 SLC9B1Q4ZJI4 515 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 GADL1Q6ZQY3 521 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 TP53INP2Q8IXH6 220 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 HACE1Q8IYU2 909 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 DCLK2Q8N568 766 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 MAPK15Q8TD08 544 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 JADE3Q92613 823 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 PGBD4Q96DM1 585 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 EIF2B3Q9NR50 452 aaKnown RBP13.03□□□□□ -0.32
SHMT1-205ENST00000395684 SEPT10Q9P0V9 454 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 RPS6KL1Q9Y6S9 549 aa13.03□□□□□ -0.32
SHMT1-205ENST00000395684 SF3B1O75533 1304 aaKnown RBP eCLIP13.03□□□□□ -0.32
SHMT1-205ENST00000395684 WDR90Q96KV7 1748 aa13.02□□□□□ -0.32
SHMT1-205ENST00000395684 ANKRD33BA6NCL7 494 aa13.02□□□□□ -0.32
SHMT1-205ENST00000395684 E9PBE3 544 aa13.02□□□□□ -0.32
SHMT1-205ENST00000395684 KLHL41O60662 606 aa13.02□□□□□ -0.32
SHMT1-205ENST00000395684 RTN3O95197 1032 aaPredicted RBP13.02□□□□□ -0.32
SHMT1-205ENST00000395684 COX4I1P13073 169 aa13.02□□□□□ -0.32
SHMT1-205ENST00000395684 SERPINB6P35237 376 aa13.02□□□□□ -0.32
SHMT1-205ENST00000395684 GP5P40197 560 aa13.02□□□□□ -0.32
SHMT1-205ENST00000395684 BIRC2Q13490 618 aa13.02□□□□□ -0.32
SHMT1-205ENST00000395684 TRIP10Q15642 601 aa13.02□□□□□ -0.32
SHMT1-205ENST00000395684 EPGNQ6UW88 154 aa13.02□□□□□ -0.32
SHMT1-205ENST00000395684 KBTBD6Q86V97 674 aa13.02□□□□□ -0.32
SHMT1-205ENST00000395684 NDRG1Q92597 394 aaKnown RBP13.02□□□□□ -0.32
SHMT1-205ENST00000395684 CERS2Q96G23 380 aa13.02□□□□□ -0.32
SHMT1-205ENST00000395684 CCDC28BQ9BUN5 200 aa13.02□□□□□ -0.32
SHMT1-205ENST00000395684 FAM96AQ9H5X1 160 aa13.02□□□□□ -0.32
SHMT1-205ENST00000395684 TXNDC16Q9P2K2 825 aa13.02□□□□□ -0.32
SHMT1-205ENST00000395684 PACSIN3Q9UKS6 424 aa13.02□□□□□ -0.32
SHMT1-205ENST00000395684 PCDHB12Q9Y5F1 795 aa13.02□□□□□ -0.32
SHMT1-205ENST00000395684 OPHN1O60890 802 aa13.02□□□□□ -0.33
SHMT1-205ENST00000395684 PDGFRBP09619 1106 aa13.02□□□□□ -0.33
SHMT1-205ENST00000395684 MX2P20592 715 aa13.02□□□□□ -0.33
SHMT1-205ENST00000395684 ARL4AP40617 200 aa13.02□□□□□ -0.33
SHMT1-205ENST00000395684 MTTPP55157 894 aa13.02□□□□□ -0.33
SHMT1-205ENST00000395684 NAB1Q13506 487 aa13.02□□□□□ -0.33
SHMT1-205ENST00000395684 ZNF484Q5JVG2 852 aa13.02□□□□□ -0.33
SHMT1-205ENST00000395684 ARHGAP17Q68EM7 881 aa13.02□□□□□ -0.33
SHMT1-205ENST00000395684 ZNF567Q8N184 647 aa13.02□□□□□ -0.33
SHMT1-205ENST00000395684 NLRP7Q8WX94 980 aa13.02□□□□□ -0.33
SHMT1-205ENST00000395684 MOCOSQ96EN8 888 aa13.02□□□□□ -0.33
SHMT1-205ENST00000395684 ZCWPW1Q9H0M4 648 aa13.02□□□□□ -0.33
SHMT1-205ENST00000395684 CPSF2Q9P2I0 782 aaKnown RBP13.02□□□□□ -0.33
SHMT1-205ENST00000395684 TUBGCP4Q9UGJ1 667 aa13.02□□□□□ -0.33
SHMT1-205ENST00000395684 FZD10Q9ULW2 581 aa13.02□□□□□ -0.33
SHMT1-205ENST00000395684 A0A1B0GVG6 124 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 G3V2L1 256 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 POLBP06746 335 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 PIM1P11309 404 aaPredicted RBP13.01□□□□□ -0.33
SHMT1-205ENST00000395684 LMO2P25791 158 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 MAGEA12P43365 314 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 ABCG1P45844 678 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 SNX16P57768 344 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 PITX1P78337 314 aaPredicted RBP13.01□□□□□ -0.33
SHMT1-205ENST00000395684 KLF10Q13118 480 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 DLG2Q15700 870 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 KYAT1Q16773 422 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 GRTP1Q5TC63 336 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 NT5DC4Q86YG4 428 aa13.01□□□□□ -0.33
SHMT1-205ENST00000395684 ANKRD52Q8NB46 1076 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms