RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ASIC3Q9UHC3 531 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 STAP1Q9ULZ2 295 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 NUMBLQ9Y6R0 609 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 BRWD1Q9NSI6 2320 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 A6NNZ2 444 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 HEPACAM2A8MVW5 462 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 PI4K2BG5E9Z4 385 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 LATS1O95835 1130 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 F9P00740 461 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 IVLP07476 585 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 SLC2A3P11169 496 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 MBL2P11226 248 aaPredicted RBP10.54□□□□□ -0.72
VPS53-202ENST00000389040 GLULP15104 373 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 ITIH2P19823 946 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 PSMA2P25787 234 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 PTPN7P35236 360 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 RFC1P35251 1148 aaPredicted RBP10.54□□□□□ -0.72
VPS53-202ENST00000389040 MATKP42679 507 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 IRAK1P51617 712 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 RING1Q06587 406 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 PDGFRLQ15198 375 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 TUBB8Q3ZCM7 444 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 ATP13A4Q4VNC1 1196 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 STXBP5Q5T5C0 1151 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 AGBL2Q5U5Z8 902 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 PARM1Q6UWI2 310 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 LRRC31Q6UY01 552 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 FAM183BPQ6ZVS7 135 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 UNC45BQ8IWX7 931 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 SLC44A3Q8N4M1 653 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 FNIP1Q8TF40 1166 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 FGF14Q92915 247 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 IRF7Q92985 503 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 NT5C3BQ969T7 300 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 AZIN2Q96A70 460 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 PLD4Q96BZ4 506 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 PGAP3Q96FM1 320 aaPredicted RBP10.54□□□□□ -0.72
VPS53-202ENST00000389040 MSANTD3Q96H12 275 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 SERPINB11Q96P15 392 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 CYP2S1Q96SQ9 504 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 NCAPGQ9BPX3 1015 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 KLF16Q9BXK1 252 aaPredicted RBP10.54□□□□□ -0.72
VPS53-202ENST00000389040 SMOC2Q9H3U7 446 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 CCSER2Q9H7U1 834 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 SLC2A4RGQ9NR83 387 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 DDX56Q9NY93 547 aaKnown RBP10.54□□□□□ -0.72
VPS53-202ENST00000389040 TJP2Q9UDY2 1190 aa10.54□□□□□ -0.72
VPS53-202ENST00000389040 TP73O15350 636 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 EIF3HO15372 352 aaKnown RBP eCLIP10.53□□□□□ -0.72
VPS53-202ENST00000389040 TJP3O95049 919 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 SRFP11831 508 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 ATP1A2P50993 1020 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 HNRNPH2P55795 449 aaKnown RBP10.53□□□□□ -0.72
VPS53-202ENST00000389040 COPS2P61201 443 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 GNGT1P63211 74 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 ZNF77Q15935 545 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 KRT71Q3SY84 523 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 ODF2Q5BJF6 829 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 TANGO2Q6ICL3 276 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 MFSD7Q6UXD7 560 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 SPOCD1Q6ZMY3 1216 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 HTR3DQ70Z44 454 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 POLNQ7Z5Q5 900 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 HOOK3Q86VS8 718 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 RNF135Q8IUD6 432 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 YAF2Q8IY57 180 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 JOSD2Q8TAC2 188 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.53□□□□□ -0.72
VPS53-202ENST00000389040 LSM7Q9UK45 103 aaKnown RBP10.53□□□□□ -0.72
VPS53-202ENST00000389040 TLR6Q9Y2C9 796 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 NEU2Q9Y3R4 380 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 CPQQ9Y646 472 aa10.53□□□□□ -0.72
VPS53-202ENST00000389040 NRG2O14511 850 aaPredicted RBP10.52□□□□□ -0.72
VPS53-202ENST00000389040 DAB1O75553 588 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 FYNP06241 537 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 KRT10P13645 584 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 ALADP13716 330 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 ADCY8P40145 1251 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 HARS2P49590 506 aaKnown RBP10.52□□□□□ -0.72
VPS53-202ENST00000389040 PGFP49763 221 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 CAV1Q03135 178 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 ADCY2Q08462 1091 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 USP4Q13107 963 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 TRIP13Q15645 432 aaPredicted RBP10.52□□□□□ -0.72
VPS53-202ENST00000389040 TRIP4Q15650 581 aaPredicted RBP10.52□□□□□ -0.72
VPS53-202ENST00000389040 SLC25A52Q3SY17 297 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 DCAF6Q58WW2 860 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 FAM102AQ5T9C2 384 aaPredicted RBP10.52□□□□□ -0.72
VPS53-202ENST00000389040 KAZNQ674X7 775 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 NUGGCQ68CJ6 796 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 TXNRD3NBQ6F5E7 133 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 POTEHQ6S545 545 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 ARFGAP2Q8N6H7 521 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 SH3RF2Q8TEC5 729 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 CLEC4CQ8WTT0 213 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 OSCP1Q8WVF1 389 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 RAPGEF5Q92565 580 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 DNASE1L2Q92874 299 aa10.52□□□□□ -0.72
VPS53-202ENST00000389040 KHSRPQ92945 711 aaKnown RBP eCLIP10.52□□□□□ -0.72
VPS53-202ENST00000389040 ZFRQ96KR1 1074 aaKnown RBP10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms