RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 NAA35Q5VZE5 725 aa17.4■□□□□ 0.38
HMGN4-201ENST00000377575 LYSMD4Q5XG99 296 aa17.4■□□□□ 0.38
HMGN4-201ENST00000377575 TRIM72Q6ZMU5 477 aa17.4■□□□□ 0.38
HMGN4-201ENST00000377575 SND1Q7KZF4 910 aaKnown RBP eCLIP17.4■□□□□ 0.38
HMGN4-201ENST00000377575 TMEFF1Q8IYR6 380 aa17.4■□□□□ 0.38
HMGN4-201ENST00000377575 CFAP52Q8N1V2 620 aa17.4■□□□□ 0.38
HMGN4-201ENST00000377575 FRMD1Q8N878 549 aa17.4■□□□□ 0.38
HMGN4-201ENST00000377575 SLC20A1Q8WUM9 679 aa17.4■□□□□ 0.38
HMGN4-201ENST00000377575 MYEOVQ96EZ4 313 aa17.4■□□□□ 0.38
HMGN4-201ENST00000377575 SLC6A17Q9H1V8 727 aa17.4■□□□□ 0.38
HMGN4-201ENST00000377575 FBRSQ9HAH7 460 aa17.4■□□□□ 0.38
HMGN4-201ENST00000377575 CACNA1AO00555 2505 aa17.39■□□□□ 0.37
HMGN4-201ENST00000377575 ASLP04424 464 aa17.39■□□□□ 0.37
HMGN4-201ENST00000377575 ATP1A3P13637 1013 aa17.39■□□□□ 0.37
HMGN4-201ENST00000377575 ST8SIA6P61647 398 aa17.39■□□□□ 0.37
HMGN4-201ENST00000377575 FOXK2Q01167 660 aa17.39■□□□□ 0.37
HMGN4-201ENST00000377575 BRMS1LQ5PSV4 323 aa17.39■□□□□ 0.37
HMGN4-201ENST00000377575 ARMCX6Q7L4S7 300 aa17.39■□□□□ 0.37
HMGN4-201ENST00000377575 APTXQ7Z2E3 356 aaKnown RBP17.39■□□□□ 0.37
HMGN4-201ENST00000377575 METTL3Q86U44 580 aaKnown RBP17.39■□□□□ 0.37
HMGN4-201ENST00000377575 TMPRSS6Q8IU80 811 aa17.39■□□□□ 0.37
HMGN4-201ENST00000377575 CPA5Q8WXQ8 436 aa17.39■□□□□ 0.37
HMGN4-201ENST00000377575 PRCCQ92733 491 aaPredicted RBP17.39■□□□□ 0.37
HMGN4-201ENST00000377575 SIPA1Q96FS4 1042 aa17.39■□□□□ 0.37
HMGN4-201ENST00000377575 NPY6RQ99463 290 aa17.39■□□□□ 0.37
HMGN4-201ENST00000377575 PRMT1Q99873 361 aaKnown RBP17.39■□□□□ 0.37
HMGN4-201ENST00000377575 MKRN2Q9H000 416 aaKnown RBP17.39■□□□□ 0.37
HMGN4-201ENST00000377575 TMEM245Q9H330 911 aa17.39■□□□□ 0.37
HMGN4-201ENST00000377575 SMOC1Q9H4F8 434 aa17.39■□□□□ 0.37
HMGN4-201ENST00000377575 KIAA1522Q9P206 1035 aaPredicted RBP17.39■□□□□ 0.37
HMGN4-201ENST00000377575 LAMA1P25391 3075 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 A0A1B0GVM2 712 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 TCAF2A6NFQ2 919 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 GOLGA8SH3BPF8 625 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 SLC30A4O14863 429 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 NDUFS2O75306 463 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 F9P00740 461 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 ACADMP11310 421 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 HLA-EP13747 358 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 PTMSP20962 102 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 HOXD12P35452 270 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 CSKP41240 450 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 ZNF165P49910 485 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 COPAP53621 1224 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 LIMK1P53667 647 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 FMO1Q01740 532 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 CAMK2GQ13555 558 aaPredicted RBP17.38■□□□□ 0.37
HMGN4-201ENST00000377575 PTPRNQ16849 979 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 KLHL40Q2TBA0 621 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 DHX40Q8IX18 779 aaKnown RBP17.38■□□□□ 0.37
HMGN4-201ENST00000377575 OR2T3Q8NH03 318 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 PIGKQ92643 395 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 TTC17Q96AE7 1141 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 PGAP3Q96FM1 320 aaPredicted RBP17.38■□□□□ 0.37
HMGN4-201ENST00000377575 LMLNQ96KR4 655 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 RPRD1AQ96P16 312 aaPredicted RBP17.38■□□□□ 0.37
HMGN4-201ENST00000377575 USP36Q9P275 1121 aaKnown RBP17.38■□□□□ 0.37
HMGN4-201ENST00000377575 PI4KAP42356 2102 aa17.38■□□□□ 0.37
HMGN4-201ENST00000377575 FAM170AA1A519 330 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 KHNYNO15037 678 aaKnown RBP17.37■□□□□ 0.37
HMGN4-201ENST00000377575 GDF9O60383 454 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 CYP1A1P04798 512 aaPredicted RBP17.37■□□□□ 0.37
HMGN4-201ENST00000377575 CCDC172P0C7W6 258 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 CD6P30203 668 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 PTGER3P43115 390 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 ATXN1P54253 815 aaKnown RBP17.37■□□□□ 0.37
HMGN4-201ENST00000377575 OXCT1P55809 520 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 DEUP1Q05D60 604 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 SLC12A1Q13621 1099 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 SLC25A52Q3SY17 297 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 FILIP1LQ4L180 1135 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 C2CD6Q53TS8 623 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 PITRM1Q5JRX3 1037 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 ACBD5Q5T8D3 534 aaPredicted RBP17.37■□□□□ 0.37
HMGN4-201ENST00000377575 OTUD1Q5VV17 481 aaPredicted RBP17.37■□□□□ 0.37
HMGN4-201ENST00000377575 TCEAL6Q6IPX3 200 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 ARCQ7LC44 396 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 SYT12Q8IV01 421 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 TCEAL3Q969E4 200 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 NT5C3BQ969T7 300 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 EDEM2Q9BV94 578 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 WDCPQ9H6R7 721 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 PIGVQ9NUD9 493 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 ARHGEF38Q9NXL2 777 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 SUN2Q9UH99 717 aa17.37■□□□□ 0.37
HMGN4-201ENST00000377575 PAGE1O75459 146 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 CHRNB2P17787 502 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 MMP8P22894 467 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 OXTRP30559 389 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 FLT3P36888 993 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 NSFP46459 744 aaKnown RBP17.36■□□□□ 0.37
HMGN4-201ENST00000377575 CXCR3P49682 368 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 AUHQ13825 339 aaKnown RBP17.36■□□□□ 0.37
HMGN4-201ENST00000377575 PLEKHG6Q3KR16 790 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 FSCBQ5H9T9 825 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 RNF219Q5W0B1 726 aaPredicted RBP17.36■□□□□ 0.37
HMGN4-201ENST00000377575 IL31Q6EBC2 164 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 FBXL22Q6P050 247 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 MMS22LQ6ZRQ5 1243 aa17.36■□□□□ 0.37
HMGN4-201ENST00000377575 RABEPKQ7Z6M1 372 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms