RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 CNTN5O94779 1100 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 PAPSS2O95340 614 aaPredicted RBP13.8□□□□□ -0.2
VPS28-202ENST00000377348 MYBL1P10243 752 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 PABPC1P11940 636 aaKnown RBP13.8□□□□□ -0.2
VPS28-202ENST00000377348 FNTBP49356 437 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 ZNF252P-AS1Q0IIN9 211 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 MAPK8IP2Q13387 824 aaPredicted RBP13.8□□□□□ -0.2
VPS28-202ENST00000377348 CDH18Q13634 790 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 TSR1Q2NL82 804 aaKnown RBP13.8□□□□□ -0.2
VPS28-202ENST00000377348 ASTE1Q2TB18 679 aaPredicted RBP13.8□□□□□ -0.2
VPS28-202ENST00000377348 RABGAP1LQ5R372 815 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 TMEM92Q6UXU6 159 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 CHST9Q7L1S5 443 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 CNGA4Q8IV77 575 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 ZNF683Q8IZ20 524 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 CCAR2Q8N163 923 aaKnown RBP13.8□□□□□ -0.2
VPS28-202ENST00000377348 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.8□□□□□ -0.24e-6■□□□□ 11.3
VPS28-202ENST00000377348 TC2NQ8N9U0 490 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 FIBINQ8TAL6 211 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 ARHGEF26Q96DR7 871 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 TRIM11Q96F44 468 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 LMLNQ96KR4 655 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 PACSIN1Q9BY11 444 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 CIPCQ9C0C6 399 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 DEF6Q9H4E7 631 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 ELOVL2Q9NXB9 296 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 CACNA2D2Q9NY47 1150 aa13.8□□□□□ -0.2
VPS28-202ENST00000377348 SSU72P8A0A1W2PR75 194 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 TMEM191CA6NGB0 347 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 WASH3PC4AMC7 463 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 H0Y626 953 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 SRGAP2O75044 1071 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 PSMA2P25787 234 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 ADRA1BP35368 520 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 GALCP54803 685 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 MTA1Q13330 715 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 CRY1Q16526 586 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 SLC18A3Q16572 532 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 ZNF528Q3MIS6 628 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 FUT11Q495W5 492 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 ALFQ53S48 1182 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 ARTNQ5T4W7 220 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 MBLAC2Q68D91 279 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 SCYL2Q6P3W7 929 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 KIAA0907Q7Z7F0 614 aaPredicted RBP13.79□□□□□ -0.2
VPS28-202ENST00000377348 ADIPOR2Q86V24 386 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 CHPFQ8IZ52 775 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 AHI1Q8N157 1196 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 CYB5D2Q8WUJ1 264 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 HAPLN3Q96S86 360 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 CNPY3Q9BT09 278 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 ANP32EQ9BTT0 268 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 NHEJ1Q9H9Q4 299 aaPredicted RBP13.79□□□□□ -0.2
VPS28-202ENST00000377348 SPTLC3Q9NUV7 552 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 MPP6Q9NZW5 540 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 INTS6Q9UL03 887 aaKnown RBP13.79□□□□□ -0.2
VPS28-202ENST00000377348 ARIH1Q9Y4X5 557 aaPredicted RBP13.79□□□□□ -0.2
VPS28-202ENST00000377348 RAD54BQ9Y620 910 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 SCINQ9Y6U3 715 aa13.79□□□□□ -0.2
VPS28-202ENST00000377348 MYO18AQ92614 2054 aaKnown RBP13.79□□□□□ -0.2
VPS28-202ENST00000377348 A0A1B0GVM2 712 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 TCAF2A6NFQ2 919 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 E9PAM4 449 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 FAM72CH0Y354 149 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 AKR1B10O60218 316 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 NTSR1P30989 418 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 CSKP41240 450 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 IL12RB1P42701 662 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 ZNF234Q14588 700 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 ARL13BQ3SXY8 428 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 C5orf22Q49AR2 442 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 HSF5Q4G112 596 aaPredicted RBP13.78□□□□□ -0.2
VPS28-202ENST00000377348 EOGTQ5NDL2 527 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 FAM72AQ5TYM5 149 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 TTC39BQ5VTQ0 682 aaPredicted RBP13.78□□□□□ -0.2
VPS28-202ENST00000377348 DAB2IPQ5VWQ8 1189 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 FAM72DQ6L9T8 149 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 CXorf57Q6NSI4 855 aaKnown RBP13.78□□□□□ -0.2
VPS28-202ENST00000377348 FAM72BQ86X60 149 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 CCDC117Q8IWD4 279 aaPredicted RBP13.78□□□□□ -0.2
VPS28-202ENST00000377348 PYROXD2Q8N2H3 581 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 ARFGAP1Q8N6T3 406 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 TSTD1Q8NFU3 115 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 OR52K2Q8NGK3 314 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 KCNV2Q8TDN2 545 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 WFIKKN2Q8TEU8 576 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 UCMAQ8WVF2 138 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 NELL1Q92832 810 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 BTBD6Q96KE9 485 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 C1orf74Q96LT6 269 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 IRF2BPLQ9H1B7 796 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 TMEM51Q9NW97 253 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 ZSCAN32Q9NX65 697 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 THAP10Q9P2Z0 257 aaPredicted RBP13.78□□□□□ -0.2
VPS28-202ENST00000377348 WDR87Q6ZQQ6 2873 aa13.78□□□□□ -0.2
VPS28-202ENST00000377348 DRGXA6NNA5 263 aa13.77□□□□□ -0.21
VPS28-202ENST00000377348 APBB3O95704 486 aa13.77□□□□□ -0.21
VPS28-202ENST00000377348 CYP1A2P05177 515 aa13.77□□□□□ -0.21
VPS28-202ENST00000377348 HOXB2P14652 356 aa13.77□□□□□ -0.21
VPS28-202ENST00000377348 POLR2EP19388 210 aaKnown RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms