RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 PACS1Q6VY07 963 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 ELOA2Q8IYF1 753 aaPredicted RBP12.72□□□□□ -0.37
VPS13A-204ENST00000376634 FBXO39Q8N4B4 442 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 TRPV3Q8NET8 790 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 THAP1Q9NVV9 213 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 IQCMA0A1B0GVH7 501 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 ZNF286BP0CG31 522 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 GSTM5P46439 218 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 STK4Q13043 487 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 ESRP1Q6NXG1 681 aaKnown RBP12.72□□□□□ -0.37
VPS13A-204ENST00000376634 GLT6D1Q7Z4J2 308 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 CROCCP3Q8IVE0 287 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 CRYL1Q9Y2S2 319 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 KRT33AO76009 404 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 SNUPNO95149 360 aaKnown RBP12.72□□□□□ -0.37
VPS13A-204ENST00000376634 NAMPTP43490 491 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 ADIGQ0VDE8 80 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 EPS8Q12929 822 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 DHFR2Q86XF0 187 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 SCAIQ8N9R8 606 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 DPY30Q9C005 99 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 RIBC2Q9H4K1 309 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 FBXO10Q9UK96 956 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 FKBP6O75344 327 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 SERPINF2P08697 491 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 RPA1P27694 616 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 CSHL1Q14406 222 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 GGA3Q9NZ52 723 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 CNTNAP2Q9UHC6 1331 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 ORC1Q13415 861 aa12.72□□□□□ -0.37
VPS13A-204ENST00000376634 NAA30Q147X3 362 aaPredicted RBP12.72□□□□□ -0.37
VPS13A-204ENST00000376634 ZNF655Q8N720 491 aaPredicted RBP12.72□□□□□ -0.37
VPS13A-204ENST00000376634 IRX2Q9BZI1 471 aaPredicted RBP12.72□□□□□ -0.37
VPS13A-204ENST00000376634 SNAP23O00161 211 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 ICAM1P05362 532 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 NTSP30990 170 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 CLK2P49760 499 aaKnown RBP12.71□□□□□ -0.37
VPS13A-204ENST00000376634 FRG1Q14331 258 aaKnown RBP12.71□□□□□ -0.37
VPS13A-204ENST00000376634 ZNF280DQ6N043 979 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 CPB2Q96IY4 423 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 TMEM121Q9BTD3 319 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 ZNF518BQ9C0D4 1074 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 TMEM39BQ9GZU3 492 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 KIAA0100Q14667 2235 aaKnown RBP12.71□□□□□ -0.37
VPS13A-204ENST00000376634 CYP2F1P24903 491 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 ZNF484Q5JVG2 852 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 NEK6Q9HC98 313 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 MYOZ2Q9NPC6 264 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 LIMD1Q9UGP4 676 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 ZNF232Q9UNY5 417 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 RTTNQ86VV8 2226 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 MAP3K6O95382 1288 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 LDLRP01130 860 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 LTFP02788 710 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 RAP1GAPP47736 663 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 NT5DC3Q86UY8 548 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 CLCC1Q96S66 551 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 RUSC1Q9BVN2 902 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 CYP2A6P11509 494 aaPredicted RBP12.71□□□□□ -0.37
VPS13A-204ENST00000376634 CCR1P32246 355 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 STARP49675 285 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 MYRFQ9Y2G1 1151 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 DAGLAQ9Y4D2 1042 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 SEC24CP53992 1094 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 KCNMB4Q86W47 210 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 NSMCE2Q96MF7 247 aa12.71□□□□□ -0.37
VPS13A-204ENST00000376634 A1CFQ9NQ94 594 aaKnown RBP12.71□□□□□ -0.37
VPS13A-204ENST00000376634 TYMPP19971 482 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 PIK3CGP48736 1102 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 CCZ1BP86790 482 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 CCZ1P86791 482 aaPredicted RBP12.71□□□□□ -0.38
VPS13A-204ENST00000376634 MCOLN3Q8TDD5 553 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 NMRAL1Q9HBL8 299 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 CORO2BQ9UQ03 480 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 POLR2LP62875 67 aaKnown RBP12.71□□□□□ -0.38
VPS13A-204ENST00000376634 ATG4AQ8WYN0 398 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 PHF21BQ96EK2 531 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 BTBD9Q96Q07 612 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 DSN1Q9H410 356 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 ITGA11Q9UKX5 1188 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 MSH4O15457 936 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 ERMARDQ5T6L9 678 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 MZT2AQ6P582 158 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 FAM126BQ8IXS8 530 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 CCDC185Q8N715 623 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 MYCBPAPQ8TBZ2 947 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 MID1IP1Q9NPA3 183 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 MCUBQ9NWR8 336 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 TAF6LQ9Y6J9 622 aa12.71□□□□□ -0.38
VPS13A-204ENST00000376634 SPTLC1O15269 473 aa12.7□□□□□ -0.38
VPS13A-204ENST00000376634 CPA3P15088 417 aa12.7□□□□□ -0.38
VPS13A-204ENST00000376634 CCNA2P20248 432 aa12.7□□□□□ -0.38
VPS13A-204ENST00000376634 CHRNA5P30532 468 aa12.7□□□□□ -0.38
VPS13A-204ENST00000376634 FXR1P51114 621 aaKnown RBP eCLIP12.7□□□□□ -0.38
VPS13A-204ENST00000376634 PTGES3Q15185 160 aaKnown RBP12.7□□□□□ -0.38
VPS13A-204ENST00000376634 NOL9Q5SY16 702 aaKnown RBP12.7□□□□□ -0.38
VPS13A-204ENST00000376634 EXO5Q9H790 373 aa12.7□□□□□ -0.38
VPS13A-204ENST00000376634 REEP1Q9H902 201 aa12.7□□□□□ -0.38
VPS13A-204ENST00000376634 ELL3Q9HB65 397 aaPredicted RBP12.7□□□□□ -0.38
VPS13A-204ENST00000376634 SPATA31E1Q6ZUB1 1445 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms