RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 PRIMA1Q86XR5 153 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 SYT2Q8N9I0 419 aaPredicted RBP5.17□□□□□ -1.58
USP48-202ENST00000374730 TRIM58Q8NG06 486 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 NEK11Q8NG66 645 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 OR56A1Q8NGH5 318 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 GPR150Q8NGU9 434 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 SCFD1Q8WVM8 642 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 LINC00476Q8WZB0 136 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 RUBCNQ92622 972 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 CYFIP2Q96F07 1278 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 FUBP3Q96I24 572 aaKnown RBP eCLIP5.17□□□□□ -1.58
USP48-202ENST00000374730 CCDC42Q96M95 316 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 P2RX7Q99572 595 aaKnown RBP5.17□□□□□ -1.58
USP48-202ENST00000374730 POLR3CQ9BUI4 534 aaPredicted RBP5.17□□□□□ -1.58
USP48-202ENST00000374730 MRI1Q9BV20 369 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 FUT8Q9BYC5 575 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 SENP6Q9GZR1 1112 aaPredicted RBP5.17□□□□□ -1.58
USP48-202ENST00000374730 TMEM140Q9NV12 185 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 KLHL11Q9NVR0 708 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 TMOD2Q9NZR1 351 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 GUCA1BQ9UMX6 200 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 SAR1BQ9Y6B6 198 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 ATP8B3O60423 1300 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 UBE4BO95155 1302 aa5.17□□□□□ -1.58
USP48-202ENST00000374730 DOCK1Q14185 1865 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 COL4A5P29400 1685 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 IGLV3-22A0A075B6J6 115 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 A0A1W2PRG0 241 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 TARSL2A2RTX5 802 aaKnown RBP5.16□□□□□ -1.58
USP48-202ENST00000374730 LRRC53A6NM62 1247 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 YDJCA8MPS7 323 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 WNT10BO00744 389 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 ZNF263O14978 683 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 CETN3O15182 167 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 EPHB6O15197 1021 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 MSH4O15457 936 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 PPIP5K2O43314 1243 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 USO1O60763 962 aaKnown RBP5.16□□□□□ -1.58
USP48-202ENST00000374730 TACC1O75410 805 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 SEC31AO94979 1220 aaKnown RBP5.16□□□□□ -1.58
USP48-202ENST00000374730 GH2P01242 217 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 ATP1A1P05023 1023 aaKnown RBP5.16□□□□□ -1.58
USP48-202ENST00000374730 KRT18P05783 430 aaKnown RBP5.16□□□□□ -1.58
USP48-202ENST00000374730 HKR1P10072 659 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 RAP2AP10114 183 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 PRLRP16471 622 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 GAP43P17677 238 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 MCM3P25205 808 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 ANXA13P27216 316 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 STAT2P52630 851 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 RAP2BP61225 183 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 BIRC2Q13490 618 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 NOMO1Q15155 1222 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 LRRC41Q15345 812 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 SLC15A2Q16348 729 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 NFIL3Q16649 462 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 ASTE1Q2TB18 679 aaPredicted RBP5.16□□□□□ -1.58
USP48-202ENST00000374730 PRR16Q569H4 304 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 HERC4Q5GLZ8 1057 aaPredicted RBP5.16□□□□□ -1.58
USP48-202ENST00000374730 BEND6Q5SZJ8 279 aaPredicted RBP5.16□□□□□ -1.58
USP48-202ENST00000374730 CATSPER3Q86XQ3 398 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 RNF10Q8N5U6 811 aaKnown RBP5.16□□□□□ -1.58
USP48-202ENST00000374730 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.16□□□□□ -1.58
USP48-202ENST00000374730 FAM151AQ8WW52 585 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 SECISBP2LQ93073 1101 aaKnown RBP5.16□□□□□ -1.58
USP48-202ENST00000374730 GJA10Q969M2 543 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 FUBP1Q96AE4 644 aaKnown RBP5.16□□□□□ -1.58
USP48-202ENST00000374730 PNKPQ96T60 521 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 FGFBP2Q9BYJ0 223 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 DEFB129Q9H1M3 183 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 VPS33BQ9H267 617 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 RANBP17Q9H2T7 1088 aaKnown RBP5.16□□□□□ -1.58
USP48-202ENST00000374730 SH2D4AQ9H788 454 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 TDRD3Q9H7E2 651 aaKnown RBP5.16□□□□□ -1.58
USP48-202ENST00000374730 TUFT1Q9NNX1 390 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 ZNF277Q9NRM2 450 aaPredicted RBP5.16□□□□□ -1.58
USP48-202ENST00000374730 OLFML3Q9NRN5 406 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 TRIM10Q9UDY6 481 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 DNM3Q9UQ16 869 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 TRAF3IP3Q9Y228 551 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 TMX2Q9Y320 296 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 PCDHA13Q9Y5I0 950 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 GPR45Q9Y5Y3 372 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 ARID2Q68CP9 1835 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 CNTNAP1P78357 1384 aa5.16□□□□□ -1.58
USP48-202ENST00000374730 LOC285556D6RIA3 1793 aa5.15□□□□□ -1.58
USP48-202ENST00000374730 GTPBP10A4D1E9 387 aaKnown RBP5.15□□□□□ -1.59
USP48-202ENST00000374730 UNC119BA6NIH7 251 aa5.15□□□□□ -1.59
USP48-202ENST00000374730 HMGB1P1B2RPK0 211 aaPredicted RBP5.15□□□□□ -1.59
USP48-202ENST00000374730 FAM86B1E9PN63 330 aa5.15□□□□□ -1.59
USP48-202ENST00000374730 PDXKO00764 312 aa5.15□□□□□ -1.59
USP48-202ENST00000374730 EIF3DO15371 548 aaKnown RBP eCLIP5.15□□□□□ -1.59
USP48-202ENST00000374730 SLC16A3O15427 465 aaKnown RBP5.15□□□□□ -1.59
USP48-202ENST00000374730 CALUO43852 315 aaPredicted RBP5.15□□□□□ -1.59
USP48-202ENST00000374730 CAND2O75155 1236 aa5.15□□□□□ -1.59
USP48-202ENST00000374730 NOL4O94818 638 aa5.15□□□□□ -1.59
USP48-202ENST00000374730 SPDEFO95238 335 aa5.15□□□□□ -1.59
USP48-202ENST00000374730 POMCP01189 267 aa5.15□□□□□ -1.59
USP48-202ENST00000374730 SERPING1P05155 500 aa5.15□□□□□ -1.59
USP48-202ENST00000374730 PLEKP08567 350 aaPredicted RBP5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms