RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 PLCB1Q9NQ66 1216 aa22.46■■□□□ 1.19
CCDC28B-201ENST00000373602 PRSS16Q9NQE7 514 aa22.46■■□□□ 1.19
CCDC28B-201ENST00000373602 DDIT4Q9NX09 232 aa22.46■■□□□ 1.19
CCDC28B-201ENST00000373602 TAB2Q9NYJ8 693 aa22.46■■□□□ 1.19
CCDC28B-201ENST00000373602 SUN2Q9UH99 717 aa22.46■■□□□ 1.19
CCDC28B-201ENST00000373602 SLC12A6Q9UHW9 1150 aa22.46■■□□□ 1.19
CCDC28B-201ENST00000373602 DAB1O75553 588 aa22.45■■□□□ 1.18
CCDC28B-201ENST00000373602 ASLP04424 464 aa22.45■■□□□ 1.18
CCDC28B-201ENST00000373602 CCR1P32246 355 aa22.45■■□□□ 1.18
CCDC28B-201ENST00000373602 CSKP41240 450 aa22.45■■□□□ 1.18
CCDC28B-201ENST00000373602 GFPT1Q06210 699 aaPredicted RBP22.45■■□□□ 1.18
CCDC28B-201ENST00000373602 CDKAL1Q5VV42 579 aa22.45■■□□□ 1.18
CCDC28B-201ENST00000373602 CACUL1Q86Y37 369 aa22.45■■□□□ 1.18
CCDC28B-201ENST00000373602 ZDHHC17Q8IUH5 632 aa22.45■■□□□ 1.18
CCDC28B-201ENST00000373602 TMEM35BQ8NCS4 154 aa22.45■■□□□ 1.18
CCDC28B-201ENST00000373602 NUP58Q9BVL2 599 aa22.45■■□□□ 1.18
CCDC28B-201ENST00000373602 SYNCQ9H7C4 482 aa22.45■■□□□ 1.18
CCDC28B-201ENST00000373602 KIAA1522Q9P206 1035 aaPredicted RBP22.45■■□□□ 1.18
CCDC28B-201ENST00000373602 SUSD2Q9UGT4 822 aa22.45■■□□□ 1.18
CCDC28B-201ENST00000373602 SYNJ2BP-COX16A0A087WUM0 186 aa22.44■■□□□ 1.18
CCDC28B-201ENST00000373602 F5H5T6 163 aa22.44■■□□□ 1.18
CCDC28B-201ENST00000373602 ABCB4P21439 1286 aa22.44■■□□□ 1.18
CCDC28B-201ENST00000373602 MAPK8P45983 427 aa22.44■■□□□ 1.18
CCDC28B-201ENST00000373602 UAP1L1Q3KQV9 507 aa22.44■■□□□ 1.18
CCDC28B-201ENST00000373602 PITRM1Q5JRX3 1037 aa22.44■■□□□ 1.18
CCDC28B-201ENST00000373602 MMS22LQ6ZRQ5 1243 aa22.44■■□□□ 1.18
CCDC28B-201ENST00000373602 KDM1BQ8NB78 822 aa22.44■■□□□ 1.18
CCDC28B-201ENST00000373602 DNASE2BQ8WZ79 361 aa22.44■■□□□ 1.18
CCDC28B-201ENST00000373602 STK33Q9BYT3 514 aa22.44■■□□□ 1.18
CCDC28B-201ENST00000373602 PDCL3Q9H2J4 239 aa22.44■■□□□ 1.18
CCDC28B-201ENST00000373602 FSCN3Q9NQT6 498 aa22.44■■□□□ 1.18
CCDC28B-201ENST00000373602 COX16Q9P0S2 106 aa22.44■■□□□ 1.18
CCDC28B-201ENST00000373602 PCDH15Q96QU1 1955 aa22.43■■□□□ 1.18
CCDC28B-201ENST00000373602 H0Y626 953 aa22.43■■□□□ 1.18
CCDC28B-201ENST00000373602 CSRP1P21291 193 aaKnown RBP22.43■■□□□ 1.18
CCDC28B-201ENST00000373602 MAOBP27338 520 aa22.43■■□□□ 1.18
CCDC28B-201ENST00000373602 NOS2P35228 1153 aa22.43■■□□□ 1.18
CCDC28B-201ENST00000373602 NOVA1P51513 510 aaKnown RBP22.43■■□□□ 1.18
CCDC28B-201ENST00000373602 ST8SIA6P61647 398 aa22.43■■□□□ 1.18
CCDC28B-201ENST00000373602 RPS14P62263 151 aaKnown RBP22.43■■□□□ 1.18
CCDC28B-201ENST00000373602 ZBTB16Q05516 673 aa22.43■■□□□ 1.18
CCDC28B-201ENST00000373602 PSAPL1Q6NUJ1 521 aa22.43■■□□□ 1.18
CCDC28B-201ENST00000373602 RNF34Q969K3 372 aa22.43■■□□□ 1.18
CCDC28B-201ENST00000373602 MRGPRX3Q96LB0 322 aa22.43■■□□□ 1.18
CCDC28B-201ENST00000373602 METTL12A8MUP2 240 aa22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 MEI4A8MW99 385 aa22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 ARHGAP33O14559 1287 aa22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 MOCS3O95396 460 aa22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 GNSP15586 552 aa22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 GABRB2P47870 512 aa22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 ATXN3P54252 364 aaPredicted RBP22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 MTA1Q13330 715 aa22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 ARID5BQ14865 1188 aa22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 KRT31Q15323 416 aa22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 HNRNPA1L2Q32P51 320 aaKnown RBP22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 PLEKHG6Q3KR16 790 aa22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 SH3PXD2AQ5TCZ1 1133 aa22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 TTC39BQ5VTQ0 682 aaPredicted RBP22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 DCAF12L1Q5VU92 463 aa22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 TAF3Q5VWG9 929 aa22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 PCED1AQ9H1Q7 454 aa22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 VPS16Q9H269 839 aa22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 MTG2Q9H4K7 406 aa22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 RRN3Q9NYV6 651 aa22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 ERVW-1Q9UQF0 538 aa22.42■■□□□ 1.18
CCDC28B-201ENST00000373602 F8VZ95 297 aa22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 M0QYT0 321 aa22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 GIPC1O14908 333 aa22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 SRPRAP08240 638 aaKnown RBP22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 SYPP08247 313 aa22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 PMLP29590 882 aa22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 MATKP42679 507 aa22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 NME3Q13232 169 aa22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 OTUD1Q5VV17 481 aaPredicted RBP22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 FBXL22Q6P050 247 aa22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 NOP9Q86U38 636 aaKnown RBP22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 FAM124AQ86V42 546 aa22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 APCDD1Q8J025 514 aa22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 CCAR2Q8N163 923 aaKnown RBP22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 C18orf8Q96DM3 657 aa22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 NPY6RQ99463 290 aa22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 GTPBP2Q9BX10 602 aaKnown RBP22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 RSPH9Q9H1X1 276 aaPredicted RBP22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 GANQ9H2C0 597 aa22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 ASCC3Q8N3C0 2202 aaKnown RBP22.41■■□□□ 1.18
CCDC28B-201ENST00000373602 ADAMTS9Q9P2N4 1935 aa22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 A0A1B0GVM2 712 aa22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 TCAF2A6NFQ2 919 aa22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 GOLGA6L22H0YM25 854 aa22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 LSM8O95777 96 aaKnown RBP22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 DNTTP04053 509 aa22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 CEACAM1P13688 526 aa22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 SCNN1AP37088 669 aa22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 CTSOP43234 321 aaPredicted RBP22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 SLC12A1Q13621 1099 aa22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 AUHQ13825 339 aaKnown RBP22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 RABGAP1LQ5R372 815 aa22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 ZNF776Q68DI1 518 aaPredicted RBP22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 ERICH1Q86X53 443 aa22.4■■□□□ 1.18
CCDC28B-201ENST00000373602 EPS8L1Q8TE68 723 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms