RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 FASTKD5Q7L8L6 764 aaKnown RBP16.25■□□□□ 0.19
COL17A1-202ENST00000369733 ZNF572Q7Z3I7 529 aaPredicted RBP16.25■□□□□ 0.19
COL17A1-202ENST00000369733 FOPNLQ96NB1 174 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 REXO4Q9GZR2 422 aaKnown RBP16.25■□□□□ 0.19
COL17A1-202ENST00000369733 PTPRHQ9HD43 1115 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 VTA1Q9NP79 307 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 MAN1C1Q9NR34 630 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 PLA2G4CQ9UP65 541 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 AGLP35573 1532 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 TCRBV9S1A1TA0A576 114 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 KCNK1O00180 336 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 DYNC1LI2O43237 492 aaPredicted RBP16.25■□□□□ 0.19
COL17A1-202ENST00000369733 ABCG1P45844 678 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 CRADDP78560 199 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 GTF2BQ00403 316 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 NR1D2Q14995 579 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 ARMC4Q5T2S8 1044 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 ZNF470Q6ECI4 717 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 PLEKHM3Q6ZWE6 761 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 SPOCK2Q92563 424 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 S100A14Q9HCY8 104 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 UTP6Q9NYH9 597 aaKnown RBP16.25■□□□□ 0.19
COL17A1-202ENST00000369733 ATF5Q9Y2D1 282 aaPredicted RBP16.25■□□□□ 0.19
COL17A1-202ENST00000369733 ASTN2O75129 1339 aaPredicted RBP16.25■□□□□ 0.19
COL17A1-202ENST00000369733 PSMD10O75832 226 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 POLD3Q15054 466 aaPredicted RBP16.25■□□□□ 0.19
COL17A1-202ENST00000369733 NR6A1Q15406 480 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 ZDHHC17Q8IUH5 632 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 CELF6Q96J87 481 aaKnown RBP16.25■□□□□ 0.19
COL17A1-202ENST00000369733 CEP44Q9C0F1 390 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 ITGB1BP2Q9UKP3 347 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 ROBO3Q96MS0 1386 aa16.25■□□□□ 0.19
COL17A1-202ENST00000369733 C15orf38-AP3S2A0A0A6YYH1 394 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 LYPLA1O75608 230 aaPredicted RBP16.24■□□□□ 0.19
COL17A1-202ENST00000369733 GRIA3P42263 894 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 MAP3K7CLP57077 242 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 RAB14P61106 215 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 PSME3P61289 254 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 SCARA3Q6AZY7 606 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 ARPINQ7Z6K5 226 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 PHF13Q86YI8 300 aaPredicted RBP16.24■□□□□ 0.19
COL17A1-202ENST00000369733 NMUR2Q9GZQ4 415 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 DDX4Q9NQI0 724 aaKnown RBP16.24■□□□□ 0.19
COL17A1-202ENST00000369733 ITGA11Q9UKX5 1188 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 TCRBV7S2A1N4TA0A589 114 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 TRIM38O00635 465 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 FBXO21O94952 628 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 ARIH2O95376 493 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 MED26O95402 600 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 CTSHP09668 335 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 RP9Q8TA86 221 aaKnown RBP16.24■□□□□ 0.19
COL17A1-202ENST00000369733 PCDHB18PQ96TA0 734 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 CCDC28BQ9BUN5 200 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 RERGLQ9H628 205 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 TBC1D13Q9NVG8 400 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 STK39Q9UEW8 545 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 PLA2G6O60733 806 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 USP12O75317 370 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 PLK1P53350 603 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 SLC6A3Q01959 620 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 ARSHQ5FYA8 562 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 MAGEE2Q8TD90 523 aaPredicted RBP16.24■□□□□ 0.19
COL17A1-202ENST00000369733 PNPLA3Q9NST1 481 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 COG5Q9UP83 839 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 TPRKBQ9Y3C4 175 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 C2orf71A6NGG8 1288 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 TMEM114B3SHH9 223 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 E5RJQ4 531 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 LYNP07948 512 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 SEPT8Q92599 483 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 SLC4A5Q9BY07 1137 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 UGT2B28Q9BY64 529 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 HPS4Q9NQG7 708 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 LIMD1Q9UGP4 676 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 CRLS1Q9UJA2 301 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 SLC12A4Q9UP95 1085 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 TNS2Q63HR2 1409 aa16.24■□□□□ 0.19
COL17A1-202ENST00000369733 A0A1B0GW55 424 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 MFN2O95140 757 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 DUX4L2P0CJ85 424 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 DUX4L3P0CJ86 424 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 DUX4L4P0CJ87 422 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 DUX4L5P0CJ88 424 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 DUX4L6P0CJ89 424 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 DUX4L7P0CJ90 424 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 NAGLUP54802 743 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 SNX17Q15036 470 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 DUX4Q9UBX2 424 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 ANAPC2Q9UJX6 822 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 TRHDEQ9UKU6 1024 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 EME2A4GXA9 379 aaPredicted RBP16.23■□□□□ 0.19
COL17A1-202ENST00000369733 C5orf60A6NFR6 353 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 SPATA31C1P0DKV0 1188 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 SLC2A3P11169 496 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 MAPK1P28482 360 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 GABRB2P47870 512 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 DDR2Q16832 855 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 LIN52Q52LA3 116 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 C10orf120Q5SQS8 335 aa16.23■□□□□ 0.19
COL17A1-202ENST00000369733 ZDHHC13Q8IUH4 622 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms