RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 TBL1XO60907 577 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 RNASEH2AO75792 299 aaKnown RBP14.39□□□□□ -0.11
VPS29-201ENST00000360579 WNT1P04628 370 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 MYL1P05976 194 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 TRIM49P0CI25 452 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 TRIM49CP0CI26 452 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 CKMT2P17540 419 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 NR2F2P24468 414 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 CD70P32970 193 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 ME1P48163 572 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 RXRGP48443 463 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 SLC11A2P49281 568 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 RAD23BP54727 409 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 CLDN6P56747 220 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 SHBQ15464 509 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 NFIL3Q16649 462 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 KMT5BQ4FZB7 885 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 PIK3R6Q5UE93 754 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 BSPRYQ5W0U4 402 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 RESP18Q5W5W9 173 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 NUGGCQ68CJ6 796 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 KRT39Q6A163 491 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 BHLHA9Q7RTU4 235 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 MFN1Q8IWA4 741 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 CCDC117Q8IWD4 279 aaPredicted RBP14.39□□□□□ -0.11
VPS29-201ENST00000360579 UNC45BQ8IWX7 931 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 ZC3H3Q8IXZ2 948 aaKnown RBP14.39□□□□□ -0.11
VPS29-201ENST00000360579 FAM186BQ8IYM0 893 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 GRAMD1CQ8IYS0 662 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 SIX6OS1Q8N1H7 587 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 RFFLQ8WZ73 363 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 TTC17Q96AE7 1141 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 HESX1Q9UBX0 185 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 TENM4Q6N022 2769 aa14.39□□□□□ -0.11
VPS29-201ENST00000360579 A0A1W2PP55 124 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 A0A1W2PR77 199 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 TARSL2A2RTX5 802 aaKnown RBP14.38□□□□□ -0.11
VPS29-201ENST00000360579 ERVH48-1M5A8F1 160 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 TLR4O00206 839 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 MID1O15344 667 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 BRINP1O60477 761 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 MAGEC1O60732 1142 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 SIN3BO75182 1162 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 RPL13P26373 211 aaKnown RBP14.38□□□□□ -0.11
VPS29-201ENST00000360579 PSMC2P35998 433 aaKnown RBP14.38□□□□□ -0.11
VPS29-201ENST00000360579 NXPH1P58417 271 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 CFHR1Q03591 330 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 TLE3Q04726 772 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 ADIGQ0VDE8 80 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 BST2Q10589 180 aaKnown RBP14.38□□□□□ -0.11
VPS29-201ENST00000360579 TBC1D25Q3MII6 688 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 SFMBT2Q5VUG0 894 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 SND1Q7KZF4 910 aaKnown RBP eCLIP14.38□□□□□ -0.114e-6■■■□□ 14.7
VPS29-201ENST00000360579 HJURPQ8NCD3 748 aaPredicted RBP14.38□□□□□ -0.11
VPS29-201ENST00000360579 FIBINQ8TAL6 211 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 EDEM1Q92611 657 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 AZIN2Q96A70 460 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 SERAC1Q96JX3 654 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 DDX50Q9BQ39 737 aaKnown RBP14.38□□□□□ -0.11
VPS29-201ENST00000360579 NEUROG2Q9H2A3 272 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 MMRN2Q9H8L6 949 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 EBF2Q9HAK2 575 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 SERGEFQ9UGK8 458 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 CLCA2Q9UQC9 943 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 SHROOM3Q8TF72 1996 aa14.38□□□□□ -0.11
VPS29-201ENST00000360579 EDDM13A0A1B0GTR0 161 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 YJEFN3A6XGL0 299 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 E7ENQ6 273 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 J3QKU1 62 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 STX10O60499 249 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 ADH1BP00325 375 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 GOT1P17174 413 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 GLDCP23378 1020 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 SLC8A1P32418 973 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 NUDT1P36639 197 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 CSKP41240 450 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 SGSHP51688 502 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 E2F1Q01094 437 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 KCNJ12Q14500 433 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 GOLGA7BQ2TAP0 167 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 MMAAQ8IVH4 418 aaKnown RBP14.37□□□□□ -0.11
VPS29-201ENST00000360579 DHX40Q8IX18 779 aaKnown RBP14.37□□□□□ -0.11
VPS29-201ENST00000360579 SCML4Q8N228 414 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 DCBLD1Q8N8Z6 715 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 FBXL13Q8NEE6 735 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 WFDC5Q8TCV5 224 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 NDRG1Q92597 394 aaKnown RBP14.37□□□□□ -0.11
VPS29-201ENST00000360579 CCDC47Q96A33 483 aaKnown RBP14.37□□□□□ -0.11
VPS29-201ENST00000360579 WBP1Q96G27 269 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 PAGE5Q96GU1 130 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 MYO19Q96H55 970 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 MTG2Q9H4K7 406 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 CNGB3Q9NQW8 809 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 SERTAD1Q9UHV2 236 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 TSPAN16Q9UKR8 245 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 PCDHA7Q9UN72 937 aa14.37□□□□□ -0.11
VPS29-201ENST00000360579 C10orf142B7Z368 130 aa14.36□□□□□ -0.11
VPS29-201ENST00000360579 MSI1O43347 362 aaKnown RBP14.36□□□□□ -0.11
VPS29-201ENST00000360579 ACTN4O43707 911 aaKnown RBP14.36□□□□□ -0.11
VPS29-201ENST00000360579 ACSL4O60488 711 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms