RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ZBTB6Q15916 424 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 FAM172AQ8WUF8 416 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 ERVK-7P63135 1459 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 KPNA6O60684 536 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 ITGAVP06756 1048 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 MRPS22P82650 360 aaKnown RBP12.85□□□□□ -0.35
COL6A3-203ENST00000353578 ZNF423Q2M1K9 1284 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 VWA5B1Q5TIE3 1220 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 TTC7BQ86TV6 843 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 RNF145Q96MT1 663 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 KCTD15Q96SI1 283 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-203ENST00000353578 C1QTNF1Q9BXJ1 281 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 ARHGAP28Q9P2N2 729 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 LRRC7Q96NW7 1537 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 FAM196BA6NMK8 535 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 PGRMC2O15173 223 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 METTL21CQ5VZV1 264 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 PID1Q7Z2X4 250 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 KBTBD2Q8IY47 623 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 OR8H3Q8N146 312 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 EPB41L1Q9H4G0 881 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 GARTP22102 1010 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 OVGP1Q12889 678 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 SLC9A5Q14940 896 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 ZNF829Q3KNS6 432 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-203ENST00000353578 SPANXN3Q5MJ09 141 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 CDCA5Q96FF9 252 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 BIRC8Q96P09 236 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 TMEM138Q9NPI0 162 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 SH3BP1Q9Y3L3 701 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 F8W031 263 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-203ENST00000353578 H6PDO95479 791 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 LRRC74AQ0VAA2 488 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 TRMT13Q9NUP7 481 aaKnown RBP12.85□□□□□ -0.35
COL6A3-203ENST00000353578 NDFIP2Q9NV92 336 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 THRAP3Q9Y2W1 955 aaKnown RBP12.85□□□□□ -0.35
COL6A3-203ENST00000353578 SYDE2Q5VT97 1194 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.85□□□□□ -0.35
COL6A3-203ENST00000353578 CDRT15Q96T59 188 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 AIFM2Q9BRQ8 373 aa12.85□□□□□ -0.35
COL6A3-203ENST00000353578 COPS7BQ9H9Q2 264 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-203ENST00000353578 MTF2Q9Y483 593 aaPredicted RBP12.85□□□□□ -0.35
COL6A3-203ENST00000353578 SMCO3A2RU48 225 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 ALDH1B1P30837 517 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 GPALPP1Q8IXQ4 340 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 ALDH16A1Q8IZ83 802 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 SVOPLQ8N434 492 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 HOPXQ9BPY8 73 aaPredicted RBP12.84□□□□□ -0.35
COL6A3-203ENST00000353578 DMGDHQ9UI17 866 aaKnown RBP12.84□□□□□ -0.35
COL6A3-203ENST00000353578 FLT1P17948 1338 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 PGAM1P18669 254 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 GSTM5P46439 218 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 PITPNAQ00169 270 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 TRIM32Q13049 653 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 INSCQ1MX18 579 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 FEZF2Q8TBJ5 459 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 S100A14Q9HCY8 104 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 LATS2Q9NRM7 1088 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 UNC13BO14795 1591 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 NMT1P30419 496 aaKnown RBP12.84□□□□□ -0.35
COL6A3-203ENST00000353578 ACAP1Q15027 740 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 ANKRD49Q8WVL7 239 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 LBHD1Q9BQE6 289 aaPredicted RBP12.84□□□□□ -0.35
COL6A3-203ENST00000353578 PPIBP23284 216 aaKnown RBP12.84□□□□□ -0.35
COL6A3-203ENST00000353578 CHI3L1P36222 383 aaPredicted RBP12.84□□□□□ -0.35
COL6A3-203ENST00000353578 NPTX2P47972 431 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 EIF6P56537 245 aaKnown RBP12.84□□□□□ -0.35
COL6A3-203ENST00000353578 TTMPQ5BVD1 217 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 DPP8Q6V1X1 898 aaPredicted RBP12.84□□□□□ -0.35
COL6A3-203ENST00000353578 OTOAQ7RTW8 1153 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 TDRD1Q9BXT4 1180 aaKnown RBP12.84□□□□□ -0.35
COL6A3-203ENST00000353578 SMPD3Q9NY59 655 aaPredicted RBP12.84□□□□□ -0.35
COL6A3-203ENST00000353578 TRPM5Q9NZQ8 1165 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 MRASO14807 208 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 PRR29P0C7W0 189 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 UTP15Q8TED0 518 aaKnown RBP12.84□□□□□ -0.35
COL6A3-203ENST00000353578 MCEEQ96PE7 176 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 YME1L1Q96TA2 773 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 KIAA1257Q9ULG3 409 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 PTGES3LE9PB15 166 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 ENTPD5O75356 428 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 CBX6O95503 412 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 FAM228AQ86W67 206 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 PLCZ1Q86YW0 608 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 SENP6Q9GZR1 1112 aaPredicted RBP12.84□□□□□ -0.35
COL6A3-203ENST00000353578 RNF112Q9ULX5 631 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 TNPO3Q9Y5L0 923 aaKnown RBP12.84□□□□□ -0.35
COL6A3-203ENST00000353578 FRMPD2Q68DX3 1309 aaPredicted RBP12.84□□□□□ -0.35
COL6A3-203ENST00000353578 GSTT2BP0CG30 244 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 PLEKHG6Q3KR16 790 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 CREG2Q8IUH2 290 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 PLEKHO2Q8TD55 490 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 SLC20A1Q8WUM9 679 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 SPATA5L1Q9BVQ7 753 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 GINS2Q9Y248 185 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 BGNP21810 368 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 STOMP27105 288 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 MARSP56192 900 aaKnown RBP12.84□□□□□ -0.35
COL6A3-203ENST00000353578 MEA1Q16626 185 aa12.84□□□□□ -0.35
COL6A3-203ENST00000353578 ATL1Q8WXF7 558 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms