RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 WASHC2DQ5SRD0 308 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 C16orf46Q6P387 395 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 CES3Q6UWW8 571 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 KYAT3Q6YP21 454 aaKnown RBP22.37■■□□□ 1.17
SHMT1-202ENST00000352886 RPAINQ86UA6 219 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 GAD1Q99259 594 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 TMEM30AQ9NV96 361 aa22.37■■□□□ 1.17
SHMT1-202ENST00000352886 NUP205Q92621 2012 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 SHROOM3Q8TF72 1996 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 GYG2O15488 501 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 ENTPD5O75356 428 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 USP17L7P0C7H9 530 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 ESRRAP11474 423 aaPredicted RBP22.36■■□□□ 1.17
SHMT1-202ENST00000352886 HOXC8P31273 242 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 ELF1P32519 619 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 CLCNKBP51801 687 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 TPI1P60174 286 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 PURAQ00577 322 aaKnown RBP22.36■■□□□ 1.17
SHMT1-202ENST00000352886 ZMIZ2Q8NF64 920 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 ACMSDQ8TDX5 336 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 RSRC1Q96IZ7 334 aaKnown RBP22.36■■□□□ 1.17
SHMT1-202ENST00000352886 AGAP3Q96P47 875 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 NUDCD1Q96RS6 583 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 SLC38A7Q9NVC3 462 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 STX3Q13277 289 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 PDE1CQ14123 709 aaPredicted RBP22.36■■□□□ 1.17
SHMT1-202ENST00000352886 FASTKD1Q53R41 847 aaKnown RBP22.36■■□□□ 1.17
SHMT1-202ENST00000352886 RFWD3Q6PCD5 774 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 RINLQ6ZS11 566 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 RASSF3Q86WH2 238 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 TTC8Q8TAM2 541 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 KCNV2Q8TDN2 545 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 NTAN1Q96AB6 310 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 PGLYRP2Q96PD5 576 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 ZFATQ9P243 1243 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 RPS6KL1Q9Y6S9 549 aa22.36■■□□□ 1.17
SHMT1-202ENST00000352886 GSC2O15499 205 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 POLBP06746 335 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 ITGA2BP08514 1039 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 ERVK-10P10266 1014 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 PTPN3P26045 913 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 LHX1P48742 406 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 AIF1P55008 147 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 AQP5P55064 265 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 SEMA3BQ13214 749 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 N4BP2L1Q5TBK1 243 aaPredicted RBP22.35■■□□□ 1.17
SHMT1-202ENST00000352886 OR52K1Q8NGK4 314 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 WWP1Q9H0M0 922 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 CNGB3Q9NQW8 809 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 FAM105AQ9NUU6 356 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 DDIT4Q9NX09 232 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 EMCNQ9ULC0 261 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 RPL26L1Q9UNX3 145 aaKnown RBP22.35■■□□□ 1.17
SHMT1-202ENST00000352886 HBS1LQ9Y450 684 aaKnown RBP22.35■■□□□ 1.17
SHMT1-202ENST00000352886 GLRA3O75311 464 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 GSRP00390 522 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 PDE1BQ01064 536 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 SCAPQ12770 1279 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 NAB1Q13506 487 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 TAF2Q6P1X5 1199 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 PDZD4Q76G19 769 aaPredicted RBP22.35■■□□□ 1.17
SHMT1-202ENST00000352886 C3orf58Q8NDZ4 430 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 PPP1R14CQ8TAE6 165 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 LPPQ93052 612 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 TXNDC16Q9P2K2 825 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 PPARGC1AQ9UBK2 798 aaKnown RBP22.35■■□□□ 1.17
SHMT1-202ENST00000352886 FBXW11Q9UKB1 542 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 CDY2AQ9Y6F7 541 aa22.35■■□□□ 1.17
SHMT1-202ENST00000352886 C9IYK1 514 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 M0QZ92 97 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 USP12O75317 370 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 THP07101 528 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 GJA9P57773 515 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 MRPS6P82932 125 aaKnown RBP22.34■■□□□ 1.17
SHMT1-202ENST00000352886 STXBP5Q5T5C0 1151 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 FAM91A1Q658Y4 838 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 DSTYKQ6XUX3 929 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 C4orf50Q6ZRC1 276 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 TMEM86AQ8N2M4 240 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 NPWQ8N729 165 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 ATP2A3Q93084 1043 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 CERS2Q96G23 380 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 GORASP1Q9BQQ3 440 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 THAP1Q9NVV9 213 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 MIOSQ9NXC5 875 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 TAS2R1Q9NYW7 299 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 ST3GAL5Q9UNP4 418 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 TRPM7Q96QT4 1865 aa22.34■■□□□ 1.17
SHMT1-202ENST00000352886 TPBGLP0DKB5 382 aa22.33■■□□□ 1.17
SHMT1-202ENST00000352886 RPL10AP62906 217 aaKnown RBP22.33■■□□□ 1.17
SHMT1-202ENST00000352886 RAB41Q5JT25 222 aa22.33■■□□□ 1.17
SHMT1-202ENST00000352886 Q9Y3F1 56 aa22.33■■□□□ 1.17
SHMT1-202ENST00000352886 H0Y3Z8 333 aa22.33■■□□□ 1.17
SHMT1-202ENST00000352886 LTFP02788 710 aa22.33■■□□□ 1.17
SHMT1-202ENST00000352886 GNAZP19086 355 aa22.33■■□□□ 1.17
SHMT1-202ENST00000352886 MCUR1Q96AQ8 359 aa22.33■■□□□ 1.17
SHMT1-202ENST00000352886 ZNF570Q96NI8 536 aa22.33■■□□□ 1.17
SHMT1-202ENST00000352886 CCNG1P51959 295 aa22.32■■□□□ 1.16
SHMT1-202ENST00000352886 PPIDQ08752 370 aaKnown RBP22.32■■□□□ 1.16
SHMT1-202ENST00000352886 SPANXN3Q5MJ09 141 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms